Locus 5733

Sequence ID 2L_DroMel_CAF1
Location 16,333,952 – 16,334,071
Length 119
Max. P 0.832122
window9076

overview

Window 6

Location 16,333,952 – 16,334,071
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 81.49
Mean single sequence MFE -29.75
Consensus MFE -21.94
Energy contribution -23.32
Covariance contribution 1.38
Combinations/Pair 1.09
Mean z-score -1.87
Structure conservation index 0.74
SVM decision value 0.72
SVM RNA-class probability 0.832122
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16333952 119 - 22407834
UCAAAUCUCAGCCAUAACCUGUAAAGAUCCUCAACAUUUACUUAGCGGACGCCAAAAAGCUUCAUAUAAGUU-GUUUUUUUUGACGCCAUCUGACACUUGUUGGAGAUCUCAGAGGAAGC
.................(((.(..(((((..(((((.....((((.((.((.(((((((...((.......)-)..))))))).))))..))))....)))))..))))).).))).... ( -25.20)
>DroSec_CAF1 7905 114 - 1
UUAAAUGAAAGCCAUAACCUGUACAGAUCCUCAACAUUUACUUAGCUGGUGCCAAAAAGCCU-----AAGCUUGUUU-UUUUGAGGCCAUCUGAUACUUGUUGGGGAUCUCAGAGGAAGC
.................(((.(..((((((((((((..((.((((.((((..(((((((.(.-----......).))-)))))..)))).))))))..)))))))))))).).))).... ( -34.40)
>DroSim_CAF1 8522 115 - 1
UUAAAUGAAAGCCAUAACCUGUACAGAUCCUCAACAUUUACUUAGGUGGUGCCAAAAAGCCU-----UUGCAUGUUUUUUUUGACGCCAUCUGAUACUUGUUGGGAAUCUCAGAGGAAGU
.................(((.(..((((.(((((((..((.((((((((((.(((((((...-----.........))))))).))))))))))))..))))))).)))).).))).... ( -32.30)
>DroYak_CAF1 8788 117 - 1
UUAAAUGCCAGCCCUAGCAUGUACAUAUCCUCAACACUUACUGAGCUUACGCCAGAAAGCUUCAUAUAAGUU-GUUU--UCUGUCGUCAUCUGACACUUGUUGGGGAUCUCAAAGGAAGC
.......((.((....))........((((((((((......((....(((.((((((((..(......)..-))))--)))).)))..)).......))))))))))......)).... ( -27.12)
>consensus
UUAAAUGAAAGCCAUAACCUGUACAGAUCCUCAACAUUUACUUAGCUGACGCCAAAAAGCCU_____AAGCU_GUUU_UUUUGACGCCAUCUGACACUUGUUGGGGAUCUCAGAGGAAGC
.................(((....((((((((((((.....((((.(((((.((((((((.............))))..)))).))))).))))....))))))))))))...))).... (-21.94 = -23.32 +   1.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:15 2006