Locus 5732

Sequence ID 2L_DroMel_CAF1
Location 16,333,433 – 16,333,547
Length 114
Max. P 0.519592
window9075

overview

Window 5

Location 16,333,433 – 16,333,547
Length 114
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 67.94
Mean single sequence MFE -23.98
Consensus MFE -6.20
Energy contribution -6.23
Covariance contribution 0.03
Combinations/Pair 1.42
Mean z-score -1.99
Structure conservation index 0.26
SVM decision value -0.03
SVM RNA-class probability 0.519592
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16333433 114 + 22407834
AUACUCAGCAUCUAUAAAUAUACCACUUGGCUUCAGUUUCCCCCACAAAAG-----UGAGUCC-CUCGAUUGAAGCUCACAUCCUGGCAGAUUUCCUGCCGUCUUUCUCUCCCGCAAAAC
.......((...................((((((((((....((((....)-----)).)...-...))))))))))........(((((.....))))).............))..... ( -22.80)
>DroSec_CAF1 7364 108 + 1
AUACUCAGCAACU------AUACCACUUGGCUUCAGUUUCCCCCACGAAAG-----UGAGUCC-CUCGAUUGAAGCUCACAUCCUGGCAGAUUUCCUGCCGUCUUUCUCUCCCGCAAAAC
.......((....------.........((((((((((....((((....)-----)).)...-...))))))))))........(((((.....))))).............))..... ( -26.50)
>DroSim_CAF1 7975 114 + 1
AAACUCAGCACCUAUAAAUAUACCACUUGGCUUCAGUUUCCCCCACGAAAG-----UGAGUCC-CUCGAUUGAAGCUCACAUCCUGGCAGAUUUCCUGCCGUCUUUCUCUCCCGCAAAAC
.......((...................((((((((((....((((....)-----)).)...-...))))))))))........(((((.....))))).............))..... ( -26.50)
>DroEre_CAF1 7590 117 + 1
AUACCCAGCAUUUAUAACCAUACCACUUGGCUUUAGUUUCCC--ACGUUCGUGGGCUGAGUUC-CUCGCUUCCAGCUCACAUCCUGGCUGAUUGCCUGCCGUCUUCCUCUCCCGGAAAAC
............................(((..(((((..((--(.(...(((((((((((..-...)))..))))))))..).)))..)))))...)))((.((((......)))).)) ( -26.80)
>DroYak_CAF1 8278 96 + 1
GUACUCUGCAUUUAAAGAUAUACCAAUUGGCCU-----------------------UGAGUCC-CUCGAUUGGAGGUCACAUCCUGGCAGAUUUCCUGUCGUCUUCCUCUCCCGAAGAAC
(((.(((........)))..)))....((((((-----------------------(.((((.-...)))).)))))))......(((((.....))))).(((((.......))))).. ( -22.80)
>DroAna_CAF1 5087 100 + 1
UUUCGCAAAA--------CCCACCUUGUUGCUUGUGUACCCUCCAUGAA-----------UCAUUUCGCAUGGU-CUUUAGUCCAGGAAUUUUCCCUGCUUUUUUCCUUUCCGAGGGGAU
...(((((((--------(.......)))..)))))..(((((...(((-----------....)))((((((.-(....).)))(((....))).))).............)))))... ( -18.50)
>consensus
AUACUCAGCAUCUAUAAAUAUACCACUUGGCUUCAGUUUCCCCCACGAAAG_____UGAGUCC_CUCGAUUGAAGCUCACAUCCUGGCAGAUUUCCUGCCGUCUUCCUCUCCCGCAAAAC
...........................(((...........................(((....))).................((((((.....))))))..........)))...... ( -6.20 =  -6.23 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:14 2006