| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,318,541 – 16,318,631 |
| Length | 90 |
| Max. P | 0.954314 |
| Location | 16,318,541 – 16,318,631 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 77.80 |
| Mean single sequence MFE | -22.22 |
| Consensus MFE | -15.89 |
| Energy contribution | -15.83 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.72 |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.954314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16318541 90 + 22407834 UAUAUA---CA-AUGUGUACUAUAUG-GCAGACGA----CAAUGUCUCGCAGUUUGGCUAGCCGUUGGCGGGACACCAUUUAUAUCAUAUAUGUAUAUG ((((((---((-(((((......(((-(.......----...((((((((....(((....)))...))))))))))))......))))).)))))))) ( -27.40) >DroPse_CAF1 17317 81 + 1 -AUAGA---UACAUAUAUUCUAUACGAACAGACGACAGACAUUGUCUCGCACUGUGGCUAGCCGAUGUCGGGACAGCA-------------AAU-UACA -(((((---.........)))))..................((((((((.((..(((....)))..))))))))))..-------------...-.... ( -15.90) >DroSec_CAF1 16535 81 + 1 -AUAUA---CA-AUAUAUACUAUAUG-GCAGACGA----CAAUGUCUCGCAGUUUGGCUAGCCGUUGGCGGGACACCAUU--------AUAUAUAUAUG -.....---..-(((((((.((((((-(.......----...((((((((....(((....)))...))))))))))).)--------)))))))))). ( -22.00) >DroSim_CAF1 16418 77 + 1 -AUAUA---CA-AUAUAUACUAUAUAUACAGACGA----CAAUGUCUCGCAGUUUGGCUAGCCGUUGGCGGGACACCA-------------UAUAUAUG -.....---..-(((((((((........))....----...((((((((....(((....)))...))))))))...-------------))))))). ( -18.10) >DroEre_CAF1 16733 76 + 1 -AUAUACUACA-AUGUGUACUAUAUG-GCAGA-------CAAUGUCUCGCAGUGCGGCUAGCCGUUGGCGGGACACCA-------------ACUAUAUG -.(((((....-..))))).((((((-(....-------...((((((((...((((....))))..))))))))...-------------.))))))) ( -25.10) >DroYak_CAF1 18721 76 + 1 -AUAUA---CA-AUGUGUACUCUGUG-GCAGACGA----CAAUGUCUCGCAGUGCGGCUAGCCGUUGGCGGGACACCA-------------UAUAUAUG -.....---..-(((((((...(((.-(....).)----)).((((((((...((((....))))..))))))))...-------------))))))). ( -24.80) >consensus _AUAUA___CA_AUAUAUACUAUAUG_GCAGACGA____CAAUGUCUCGCAGUGUGGCUAGCCGUUGGCGGGACACCA_____________UAUAUAUG ..........................................((((((((....(((....)))...))))))))........................ (-15.89 = -15.83 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:12 2006