| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,317,974 – 16,318,082 |
| Length | 108 |
| Max. P | 0.592148 |
| Location | 16,317,974 – 16,318,082 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 90.19 |
| Mean single sequence MFE | -33.56 |
| Consensus MFE | -24.34 |
| Energy contribution | -24.42 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.592148 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16317974 108 - 22407834 GUUUCCUUAUUUGAUU----UUGCUCUGUAUACGCGGACCAGAAAUCGAAUUAUCGAUUCCAAUGCCUCUGGGAUGUGGGGGUGCCACCCA----CACUCAUUGCAUAACAUGUGU (..((...((((((((----((..(((((....)))))...))))))))))....))..)..((((...((((.(((((((....).))))----))))))..))))......... ( -30.30) >DroSec_CAF1 15971 111 - 1 GUUUCCUUAUUUGAUUU-UUUUGCUCUGUAUUCGCGGAGCAGAAAUCGAAUUAUCGAUUCCAAUGCCUCUGGGAUGUGGGGGUGCCACCCA----CACGCAUUGCAUAACAUGUGU ........(((((((((-(..((((((((....)))))))))))))))))).....((((((.......))))))((((((....).))))----)((((((........)))))) ( -35.50) >DroSim_CAF1 15854 112 - 1 GUUUCCUUAUUUGAUUUUUUUUGCUCUGUAUUCGCGGAGCAGAAAUCGAAUUAUCGAUUCCAAUGCCUCUGGGAUGUGGGGGUGCCACCCA----CACGCAUUGCAUAACAUGUGU ........((((((((((...((((((((....)))))))))))))))))).....((((((.......))))))((((((....).))))----)((((((........)))))) ( -35.10) >DroEre_CAF1 16177 112 - 1 GUUUCCUUAUUUGAUU----UUGGUCUGUAUUCGCGGACCAGAAAUCGAAUUAUCGAUUUGAACGCCUCUGGGUUGUGGGGGUGCCACCCAUUGCCACUCAUUGCAUAACAUGCGU ((((............----(((((((((....)))))))))(((((((....))))))))))).......(((.((((((....).))))).))).......((((...)))).. ( -33.30) >DroYak_CAF1 18163 108 - 1 GUUUCCUUAUUCGACU----GUGGUCUGUAUUCGCGGACCAGAAAUCGAAUUAUCGAUCUGAACGCCGUUGGGAUGUGGGGGUGCCACCCA----CACUCAUUGCAUAACAUGUGU ((((....((((((.(----.((((((((....)))))))).)..)))))).........))))((...((((.(((((((....).))))----))))))..))........... ( -33.62) >consensus GUUUCCUUAUUUGAUU____UUGCUCUGUAUUCGCGGACCAGAAAUCGAAUUAUCGAUUCCAAUGCCUCUGGGAUGUGGGGGUGCCACCCA____CACUCAUUGCAUAACAUGUGU (..((...((((((((....(((((((((....))))))))).))))))))....))..)..((((...((..(((..((((((...........))))).)..)))..)).)))) (-24.34 = -24.42 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:11 2006