Locus 5728

Sequence ID 2L_DroMel_CAF1
Location 16,316,595 – 16,316,693
Length 98
Max. P 0.770538
window9071

overview

Window 1

Location 16,316,595 – 16,316,693
Length 98
Sequences 5
Columns 98
Reading direction forward
Mean pairwise identity 88.10
Mean single sequence MFE -29.38
Consensus MFE -21.36
Energy contribution -23.36
Covariance contribution 2.00
Combinations/Pair 1.08
Mean z-score -2.03
Structure conservation index 0.73
SVM decision value 0.53
SVM RNA-class probability 0.770538
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16316595 98 + 22407834
CGUUAAUGAUGCCCAAAAAUGGAUUAUGGCCAAGAAACGGGCGGUUGGUUGGUCGACCUCUAAACAUUUGGCCAUAAUUACUAUUGUGGGGAUUUCCG
.......(((.((((......(((((((((((((.....((.((((((....)))))).)).....))))))))))))).......)))).))).... ( -34.62)
>DroSec_CAF1 14606 97 + 1
CGUUAAUGAUGCCCAAAAAUGGAUUAUGGCCAAGUAACGGGCGCUUGGUUGGUCGACCUCUAAACAUUUGGCCAUAAUUACUAUUGUGGGGAU-UCCC
.......(((.((((......((((((((((((((...(((((((.....)).)).)))......)))))))))))))).......)))).))-)... ( -31.22)
>DroSim_CAF1 14486 98 + 1
CGUUAAUGAUGCCCAAAAAUGGAUUAUGGCCAAGUAACGGGCGCUUGGUUGGUCGACCUCUAAACAUUUGGCCAUAAUUACUAUUGUGGGGAUUUCCC
.......(((.((((......((((((((((((((...(((((((.....)).)).)))......)))))))))))))).......)))).))).... ( -31.22)
>DroEre_CAF1 14806 93 + 1
CGUUAAUGAUGCCCAAAAAUGGAUUACGGCCACGUUACGGGCA----GUUGGUCGACCUCAAAGCAUUUGGCCGUAAUUACUAUUGUGGGGAUUUCC-
.......(((.((((......(((((((((((.(((..(((..----(.....)..)))...)))...))))))))))).......)))).)))...- ( -28.42)
>DroYak_CAF1 14860 82 + 1
CGUUAAUGGUGCCCAAAAAUGGAUUA-----------CGGGCG----GUUGGUCGACCUCUAAACAUUUGGCCGUAAUUACUAUUGUGGGGAUUUCC-
.......(((.((((......(((((-----------(((.((----(.((.............)).))).)))))))).......)))).)))...- ( -21.44)
>consensus
CGUUAAUGAUGCCCAAAAAUGGAUUAUGGCCAAGUAACGGGCG_UUGGUUGGUCGACCUCUAAACAUUUGGCCAUAAUUACUAUUGUGGGGAUUUCC_
.......(((.((((......((((((((((((((....(((.....)))((....)).......)))))))))))))).......)))).))).... (-21.36 = -23.36 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:10 2006