Locus 5727

Sequence ID 2L_DroMel_CAF1
Location 16,309,277 – 16,309,383
Length 106
Max. P 0.507011
window9070

overview

Window 0

Location 16,309,277 – 16,309,383
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 77.35
Mean single sequence MFE -26.28
Consensus MFE -21.93
Energy contribution -20.85
Covariance contribution -1.08
Combinations/Pair 1.33
Mean z-score -0.70
Structure conservation index 0.83
SVM decision value -0.05
SVM RNA-class probability 0.507011
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16309277 106 - 22407834
GCAGAUGUACGAUCGCUUUGGUGAUCCUCGCUAUUUUGUCAGCUACAACGGUGGCAAUCCCAUGACAGUUGCCUGAAUG-CCCAUC--CAAU--CUGUACAUACG--------AU-UUAG
....((((((((((((....))))))...((....(((((((((((....))))).......))))))..)).......-......--....--..))))))...--------..-.... ( -24.71)
>DroVir_CAF1 9761 98 - 1
GCAGGUGUACGAUCGCUUCGGUGAUCCGCGCUACUUUGUCAGCUAUAAUGGCGGCAAUCCCAUGACAGUUGCUUGAAA-UUGCAUCAACAA---UUGUACAU------------------
...(((((..((((((....)))))).)))))...(((((.(((.....))))))))....((((((((((.((((..-.....)))))))---)))).)))------------------ ( -30.40)
>DroGri_CAF1 10103 105 - 1
GCAGAUGUACGAUCGCUUUGGUGAUCCGCGUUACUUUGUCAGCUACAAUGGCGGCAAUCCGAUGACAGUUGCUUGAGA-UCGCAUCAUCAA---UUGUACAUA----------AU-AUAU
....(((((((((.......((((((((.((....(((((((((.....)))((....))..))))))..)).)).))-)))).......)---)))))))).----------..-.... ( -27.84)
>DroWil_CAF1 13313 107 - 1
ACAGAUGUACGAUCGCUUUGGCGAUCCACGUUACUUUGUUAGCUAUGGCAAUGGCAAUCCCAUGACAGUUGCUUGAAACUUGCAUC--CAUUAAUUGUAUAUA----------AU-AUAC
...((((((.((((((....))))))((.((....((((((((....))..(((.....)))))))))..)).)).....))))))--...............----------..-.... ( -22.20)
>DroAna_CAF1 7365 108 - 1
GCAGAUGUACGAUCGCUUCGGUGAUCCGCGUUAUUUUGUCAGCUACAACGGCGGCAAUCCAAUGACAGUUGCUUGAAUAACCCAAC--CACU--UUGUACAUACA--------ACCUUAG
....((((((((((((....)))))).(.(((((((((((((((.....)))((....))..))))).......))))))).)...--....--..))))))...--------....... ( -27.41)
>DroPer_CAF1 7048 114 - 1
GCAGAUGUACGAUCGUUUUGGUGAUCCGCGCUACUUUGUCAGCUACAACGGCGGCAAUCCCAUGACAGUUGCCUGAGUG-CCCCAA--CCAC--UUGUACAUACCACCCCAUAAC-UUAG
....((((((((......((((.....(((((.........(((.....)))((((((.........))))))..))))-)....)--))).--)))))))).............-.... ( -25.10)
>consensus
GCAGAUGUACGAUCGCUUUGGUGAUCCGCGCUACUUUGUCAGCUACAACGGCGGCAAUCCCAUGACAGUUGCUUGAAA_UCCCAUC__CAAU__UUGUACAUA__________AU_UUAG
....((((((((((((....))))))((.((....(((((((((.....)))((....))..))))))..)).)).....................)))))).................. (-21.93 = -20.85 +  -1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:09 2006