| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,301,757 – 16,301,859 |
| Length | 102 |
| Max. P | 0.539729 |
| Location | 16,301,757 – 16,301,859 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 82.32 |
| Mean single sequence MFE | -14.38 |
| Consensus MFE | -8.24 |
| Energy contribution | -9.07 |
| Covariance contribution | 0.83 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.57 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.539729 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16301757 102 + 22407834 UCAUUAACAUUUGGAGUAAUUCUCUAAACCGUAAUUGUUGUCUUUGUUACAAAAUCUCA-AUUUCUC--UGACAACACCAA-AAAAUAAACAAGUUACAAAAACAA ....((((.(((((((.....))))))).......(((((((.................-.......--.)))))))....-...........))))......... ( -14.11) >DroSec_CAF1 17189 102 + 1 UCAUUAACAUUUGGAGUAAUUCUCUAAACCGUAAUUGUUGUCUUUCUUACAAAAUCUCA-AUUUCUC--UGACAACACAAA-AAAAUAAACAAGUUACAAAAACAA ....((((.(((((((.....))))))).......(((((((.................-.......--.)))))))....-...........))))......... ( -14.11) >DroSim_CAF1 17129 103 + 1 UCAUUAACAUUUGGAGUAAUUCUCUAAACUGUAAAUGUUGUCUUUCUUACAAAAUGGGGGGGGUGUA--UGACAACACCAA-AAAAUAAACAAGUUACAAAAACAA .((((.((((((((((.....))))))).))).))))((((((..((........))..))(((((.--.....)))))..-.......))))............. ( -21.90) >DroEre_CAF1 17739 100 + 1 UCAUUAACAUUUGGGGUAAUUCUCUAAACCGUAAUUGUUGUCCUUGUUACAAAAUCUC---UAUCUC--UGACAACACCAA-AAAAUAAACCAGUUACAAAAACAA ....((((.(((((((.....))))))).......(((((((................---......--.)))))))....-...........))))......... ( -12.10) >DroYak_CAF1 17188 102 + 1 UCAUUAACAGUUGGGGUAAUUCUCUAAACCGUAAGUGUUGUCUUCGUUACAAAUUCCUA-AUAUCUC--UGACAACACCAA-AAAAUAAACAAGUUACAAAAACAA ....((((..((((((.....)))))).......((((((((.................-.......--.))))))))...-...........))))......... ( -15.51) >DroAna_CAF1 15640 86 + 1 -------------------UUCUCUAAACCAUUAUUGUUGUCUUUGUUACAAAAUCUCA-UUCUCUCUGUGACAACACCAAAAAAAUAAACAAAUUACAAAACAAG -------------------............(((((.(((...((((((((........-.......))))))))...)))...)))))................. ( -8.56) >consensus UCAUUAACAUUUGGAGUAAUUCUCUAAACCGUAAUUGUUGUCUUUGUUACAAAAUCUCA_AUAUCUC__UGACAACACCAA_AAAAUAAACAAGUUACAAAAACAA ..........((((((.....))))))........(((((((............................)))))))............................. ( -8.24 = -9.07 + 0.83)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:08 2006