Locus 5723

Sequence ID 2L_DroMel_CAF1
Location 16,284,367 – 16,284,486
Length 119
Max. P 0.641537
window9065

overview

Window 5

Location 16,284,367 – 16,284,486
Length 119
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 92.92
Mean single sequence MFE -30.88
Consensus MFE -25.42
Energy contribution -26.68
Covariance contribution 1.25
Combinations/Pair 1.11
Mean z-score -1.67
Structure conservation index 0.82
SVM decision value 0.22
SVM RNA-class probability 0.641537
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16284367 119 - 22407834
CAGAAGAGGAAGAGGGG-UGAAGAAGAAACGGGGAAGGGGAGUUGGGUGAAAACAGCAGCGAAAUUUCUUUAAUUUCUUUAACUCACUGGCGUGCCUCUUGAUGUAAUUUAACAUCUUUA
...((((((..(...((-(((.(((((((.(((((((....((((.((....))..))))....)))))))..)))))))...)))))..)...))))))(((((......))))).... ( -33.00)
>DroSec_CAF1 28558 120 - 1
CAGAAGAGGAAGAGGGGAUGAAGAAGAAGCGGGGAAGGGGAGUUGGGUGAAAACAGCAGCGAAAUUUCUUUAAUUUCUUUAACUCACUGGCGUGCCUCUUGAUGUAAUUUAACAUCUUUA
...((((((..(..(((.((((((((....(((((((....((((.((....))..))))....)))))))..)))))))).))).....)...))))))(((((......))))).... ( -31.30)
>DroSim_CAF1 24384 120 - 1
CAGAAGAGGAAGAGGGGAUGAAGAAGAAGCGGGGAAGGGGAGUUGGGUGAAAACAGCAGCGAAAUUUCUUUAAUUUCUUUAACUCACUGGCGUGCCUCUUGAUGUAAUUUAACAUCUUUA
...((((((..(..(((.((((((((....(((((((....((((.((....))..))))....)))))))..)))))))).))).....)...))))))(((((......))))).... ( -31.30)
>DroYak_CAF1 29466 118 - 1
CAGAAGAAGAAGAGGAGA--AAGACGAAGCAGGGAAAGGGAGUUGGGUGAAAACAGCAGCGAAAUUUCUUCGAAUCGUUUGACUCACUGGCGUGCCUUUUGAUGUAAUUUAACAUUUUUA
((((((..(.((..(((.--.((((((..(..(((((....((((.((....))..))))....)))))..)..))))))..))).))..)....))))))((((......))))..... ( -27.90)
>consensus
CAGAAGAGGAAGAGGGGAUGAAGAAGAAGCGGGGAAGGGGAGUUGGGUGAAAACAGCAGCGAAAUUUCUUUAAUUUCUUUAACUCACUGGCGUGCCUCUUGAUGUAAUUUAACAUCUUUA
...((((((..(..(((.((((((((....(((((((....((((.((....))..))))....)))))))..)))))))).))).....)...))))))(((((......))))).... (-25.42 = -26.68 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:04 2006