Locus 5721

Sequence ID 2L_DroMel_CAF1
Location 16,272,872 – 16,272,967
Length 95
Max. P 0.895889
window9062

overview

Window 2

Location 16,272,872 – 16,272,967
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 94.11
Mean single sequence MFE -24.69
Consensus MFE -19.74
Energy contribution -20.82
Covariance contribution 1.08
Combinations/Pair 1.09
Mean z-score -1.96
Structure conservation index 0.80
SVM decision value 0.99
SVM RNA-class probability 0.895889
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16272872 95 + 22407834
CUUGUGCAUAUCCCCAUCUCUUUUACUGGGCAUAGGCUCUUCUCUUUCACACGUAUUUACUACAAUGUUUACUAUGUGUGACAGGCGUUGUGGUA
...(.((.(((.((((..........)))).))).)).)..................(((((((((((((((.....))))...))))))))))) ( -21.10)
>DroSec_CAF1 18578 95 + 1
CUAGUCCUUAGCCCCAUCUCUUUUACUGGGCAUAGGCUCUUCUCUUUCACACGUAUUUACUACAAUGUUUACUAUGUGUGACAGGCGUUGUGGUA
..((.(((..((((.............))))..)))))...................(((((((((((((((.....))))...))))))))))) ( -22.22)
>DroSim_CAF1 14220 95 + 1
CUAGUGCUUAGCCCCAUCUCUUUUACUGGGCAUAGGCUCUUCUCUUUCACACGUAUUUACUACAAUGUUUACUAUGUGUGACAGGCGUUGUGGUA
..((.(((((((((.............)))).))))).)).................(((((((((((((((.....))))...))))))))))) ( -25.42)
>DroEre_CAF1 14489 95 + 1
CUAGUGCAUAGCCCCAUCCCUUUUACUGGGCAUAGGCUGCUCUCUUUCACACGUAUUUACUACAAUGUUUACUAUGUGUGACAGGCGUGUUGGUA
((((..(.(((((....(((.......)))....)))))...(((.(((((((((...((......))....))))))))).))).)..)))).. ( -28.20)
>DroYak_CAF1 19857 95 + 1
CUAGUGCAUAGCCCCAUCUCUUUUACUGGGCAUAGGCCCUACUCUUUCACGCGUAUUUACUACAAUGUUUACUAUGUGUGACUGGCGUGGUGGUA
..........((((.............))))....(((((((.((.(((((((((...((......))....)))))))))..)).)))).))). ( -26.52)
>consensus
CUAGUGCAUAGCCCCAUCUCUUUUACUGGGCAUAGGCUCUUCUCUUUCACACGUAUUUACUACAAUGUUUACUAUGUGUGACAGGCGUUGUGGUA
......((((((.((............((((....)))).......(((((((((...((......))....)))))))))..)).))))))... (-19.74 = -20.82 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:01 2006