Locus 5720

Sequence ID 2L_DroMel_CAF1
Location 16,272,727 – 16,272,817
Length 90
Max. P 0.797304
window9061

overview

Window 1

Location 16,272,727 – 16,272,817
Length 90
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 83.42
Mean single sequence MFE -20.90
Consensus MFE -15.01
Energy contribution -16.61
Covariance contribution 1.60
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.72
SVM decision value 0.61
SVM RNA-class probability 0.797304
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16272727 90 - 22407834
GCUUGACCAAGUUUACACCCGCUAUAUAA------ACGUUUAAGCCCUUAUA-----------GUGCCGGCUAUAUAACAUGUUCAGUUCUAUUAAAAUACAUACAU
..((((.((.(((....(((((((((...------.(......)....))))-----------)))..))......))).)).)))).................... (  -9.50)
>DroSec_CAF1 18429 94 - 1
GCUUGACCAAGUUUACACCCGCUUUAUAA------ACGGUUAAGCCCUUAUAUUGUCGGCUAAGUGCCGGCUAUAUAACAUGUUCAAUUCUAUUAAAA-------AU
((((((((..(((((...........)))------))))))))))..((((((.((((((.....)))))).))))))....................-------.. ( -25.20)
>DroSim_CAF1 14071 94 - 1
GCUUGACCAAGUUUACACCCGCUAUAUAA------ACGGUUAAGCCUUUAUAGUGUCGGCUAAGUGCCGGCUAUAUAACAUGUUCAAUUCUAUUAAAA-------AU
((((((((..(((((...........)))------))))))))))..(((((..((((((.....))))))..)))))....................-------.. ( -23.50)
>DroEre_CAF1 14339 97 - 1
GCUUGACCAAGUUUACACCCGCUAUAUAA------UCGGUUAAGCACUUAUAGUGUCGGCUAAGUGCCGGCUAUAUAACAGGUUCAUUUCUACUAAAAUAU----AU
((((((((.....................------..)))))))).....((((((((((.....))))))........(((......)))))))......----.. ( -22.50)
>DroYak_CAF1 19709 103 - 1
GCUUGACCAAGUUUACACCCGCUAUAUAAACCCUUUCGGUUAAGCUCUGAUAGUGUCGGCUAAGUGCCGGCCAUAUAACAGAUUCAAUUCUACUAAUAUAC----AU
((((((((..(((((...........)))))......))))))))((((.((..((((((.....))))))....)).))))...................----.. ( -23.80)
>consensus
GCUUGACCAAGUUUACACCCGCUAUAUAA______ACGGUUAAGCCCUUAUAGUGUCGGCUAAGUGCCGGCUAUAUAACAUGUUCAAUUCUAUUAAAAUA_____AU
((((((((.............................))))))))..(((((..((((((.....))))))..)))))............................. (-15.01 = -16.61 +   1.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:51:00 2006