Locus 572

Sequence ID 2L_DroMel_CAF1
Location 1,765,152 – 1,765,264
Length 112
Max. P 0.817920
window943

overview

Window 3

Location 1,765,152 – 1,765,264
Length 112
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 84.84
Mean single sequence MFE -34.35
Consensus MFE -18.35
Energy contribution -21.22
Covariance contribution 2.87
Combinations/Pair 1.09
Mean z-score -3.66
Structure conservation index 0.53
SVM decision value 0.67
SVM RNA-class probability 0.817920
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1765152 112 - 22407834
CAUUGAGUGUUAAUUCCACUCUCAUAAUGGGAGAUAAUUAUUUUGAGGAGGGGGUCAAUUAAGAGGAUAUGUCUGCAGUUUGAUUUACAACCCCUCCUCAACCAACACU------CAA
..(((((((((.......(((((.....))))).........(((((((((((((.(((((((.(((....)))....))))))).))..)))))))))))..))))))------))) ( -42.40)
>DroSec_CAF1 22202 112 - 1
CAUUGAGUGUUAAUUCCACUCUCAUAAUGGGAGAUAAUUAUUUUGAGGAGGGGGUCAAUUAAGAGGAUAUGUCUGCAGUUUGAUUUACCGCCCCUCCUCAACCAUCACU------CAA
..(((((((.........(((((.....))))).........(((((((((((((.(((((((.(((....)))....))))))).))..)))))))))))....))))------))) ( -39.50)
>DroEre_CAF1 21982 114 - 1
CAUUGAGUGUUAAUUCCACUCUCAUAAUGGGAGAUAAUUACUUU-GGGGAGGAGUCAAUCAAGGAGAUAUGUCUGCAGUUCGAUUUACCACCCCU---CAACAUACUCUUAAUACUCA
...((((((((((.....(((((.....)))))...........-((((.(((((((((...(.(((....))).).))).))))..)).)))).---..........)))))))))) ( -28.30)
>DroYak_CAF1 31103 106 - 1
CAUUGAGUGUUAAUUCCACUCUCAUAAUGGGAGAUAAUUAU-UG-AGGAUGGGGUCAAUUAAGGAGAUAUGUCUGCAGAUUGAUUUACCACCCCU---CAACCU-CUCU------UCA
(((((((((.......)))))....))))(((((......(-((-(((.(((.(((((((..(.(((....))).).)))))))...)))..)))---)))...-.)))------)). ( -27.20)
>consensus
CAUUGAGUGUUAAUUCCACUCUCAUAAUGGGAGAUAAUUAUUUU_AGGAGGGGGUCAAUUAAGAAGAUAUGUCUGCAGUUUGAUUUACCACCCCU___CAACCAACACU______CAA
....((((....))))..(((((.....))))).........(((((((((((((.(((((((.(((....)))....))))))).))..)))))))))))................. (-18.35 = -21.22 +   2.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:59 2006