Locus 5719

Sequence ID 2L_DroMel_CAF1
Location 16,269,476 – 16,269,572
Length 96
Max. P 0.644291
window9060

overview

Window 0

Location 16,269,476 – 16,269,572
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 94.66
Mean single sequence MFE -25.56
Consensus MFE -24.96
Energy contribution -25.04
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -1.06
Structure conservation index 0.98
SVM decision value 0.23
SVM RNA-class probability 0.644291
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16269476 96 - 22407834
AGGUUAGAGCCAAGCUGACCGGCAGAAAAGCUCGGUUCCCAAGAGCUCAGCUUUCCCAAUUGCGUCGCAAGCUCUGGUCACAAAGAAAAAUGUAUA
.(..((((((...((.(((..((((.((((((.(((((....))))).)))))).....)))))))))..))))))..)................. ( -27.90)
>DroSec_CAF1 15258 92 - 1
AGGUUAGAGCCGCGCUGACCGGCAGAAAAGCUCGGUUCCCAAGAGCUCAGCUUUCCCAAUUGCGUCGCAAGCUCUGGUCACAAAGAAA----UAUA
.(..((((((...((.(((..((((.((((((.(((((....))))).)))))).....)))))))))..))))))..).........----.... ( -27.90)
>DroSim_CAF1 10913 92 - 1
AGGUUAGAGCCGCGCUGACCGGCAGAAAAGCUCGGUUCCCAAGAGCUCAGCUUUCCCAAUUGCGUCGCAAGCUCUCGUCACAAAGAAA----UAUA
.((..(((((...((.(((..((((.((((((.(((((....))))).)))))).....)))))))))..)))))..)).........----.... ( -25.30)
>DroEre_CAF1 10979 92 - 1
AGGUUAUAGUCGCGCUGACCGGCAGAAAAGCUCGAUUCCCAAGAGCCCAGCUUUCCCAAUUGCGUCGCAAGCUCUGGUCACAAAGAAA----UAUA
.........((....(((((((.((.((((((.(..((....))..).)))))).....((((...)))).)))))))))....))..----.... ( -18.80)
>DroYak_CAF1 11689 90 - 1
AGGUUAGAGCC--GCUGACCGGCAGAAAAGCUCGGUUCCCAAGAGCUCAGCUUUCCCAAUUGCGUCGCAAGCUCUGGUCACAAAGAAA----UAUA
.(..((((((.--((.(((..((((.((((((.(((((....))))).)))))).....)))))))))..))))))..).........----.... ( -27.90)
>consensus
AGGUUAGAGCCGCGCUGACCGGCAGAAAAGCUCGGUUCCCAAGAGCUCAGCUUUCCCAAUUGCGUCGCAAGCUCUGGUCACAAAGAAA____UAUA
.((..(((((...((.(((..((((.((((((.(((((....))))).)))))).....)))))))))..)))))..))................. (-24.96 = -25.04 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:59 2006