Locus 5718

Sequence ID 2L_DroMel_CAF1
Location 16,268,874 – 16,268,978
Length 104
Max. P 0.728812
window9059

overview

Window 9

Location 16,268,874 – 16,268,978
Length 104
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 82.45
Mean single sequence MFE -30.86
Consensus MFE -29.60
Energy contribution -29.52
Covariance contribution -0.08
Combinations/Pair 1.12
Mean z-score -1.49
Structure conservation index 0.96
SVM decision value 0.42
SVM RNA-class probability 0.728812
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16268874 104 + 22407834
CGCUGGCGUCGUCGUUCGCUUGCCGCGUUUACUUUAUUUUAUAGACGUGAAAUUCGAUCAGCUGAUUUGUGUGUGAGGGUCAGCUGCCUCUCAUUUU-----CGUGCAU
.((..(((....)))..)).(((((((((((..........)))))))((((...((.((((((((((........))))))))))..))....)))-----)).))). ( -26.90)
>DroSec_CAF1 14662 89 + 1
CGCAGGCGUCGUCGUUCGCUUGCCGCGUUUACUUUAUUUUAUAGACGUGAAAUUCGAUCAGCUGAUUUGUGUGUGAGGGUCAGCUGCCU--------------------
.(((((((........)))))))((((((((..........)))))))).........((((((((((........))))))))))...-------------------- ( -30.00)
>DroSim_CAF1 10313 89 + 1
CGCAGGCGUCGUCGUUCGCUUGCCGCGUUUACUUUAUUUUAUAGACGUGAAAUUCGAUCAGCUGAUUUGUGUGUGAGGGUCAGCUGCCU--------------------
.(((((((........)))))))((((((((..........)))))))).........((((((((((........))))))))))...-------------------- ( -30.00)
>DroEre_CAF1 10336 104 + 1
CGCAGGCGUCGUCGGUCGCUUGCCGCGUUCACUUUGUUUUUUAGACGUGAAAUUCGAUCAGCUGAUUUGUGUGUGAGGGUCAGCUGCCACUCAUUUU-----CGUGCAU
.(((((((.(....).)))))))(((((((((((((.....)))).))))).......((((((((((........))))))))))...........-----))))... ( -32.00)
>DroYak_CAF1 11059 103 + 1
CGCAGGCGGUGCCGUUUGCCUGCCGCGUUUACUUU-----AUAGACGCGAAAUUCGAUCAGCUGAUUUGUGUGUGAGGGUCAGCUGCCUCUCAUUUGUAUUAUAUGCA-
.((((((((......))))))))((((((((....-----.))))))))......((.((((((((((........))))))))))..)).....(((((...)))))- ( -35.40)
>consensus
CGCAGGCGUCGUCGUUCGCUUGCCGCGUUUACUUUAUUUUAUAGACGUGAAAUUCGAUCAGCUGAUUUGUGUGUGAGGGUCAGCUGCCUCUCAUUU________UGCA_
.(((((((........)))))))((((((((..........)))))))).........((((((((((........))))))))))....................... (-29.60 = -29.52 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:58 2006