Locus 5714

Sequence ID 2L_DroMel_CAF1
Location 16,252,852 – 16,252,943
Length 91
Max. P 0.545410
window9051

overview

Window 1

Location 16,252,852 – 16,252,943
Length 91
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 77.81
Mean single sequence MFE -22.67
Consensus MFE -10.34
Energy contribution -12.10
Covariance contribution 1.76
Combinations/Pair 1.35
Mean z-score -1.87
Structure conservation index 0.46
SVM decision value 0.02
SVM RNA-class probability 0.545410
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16252852 91 - 22407834
AAAUUGUUUCGAACGUCAACGAACACUCGCACAACUACUGAGCCACAAAGUAUGUGUGCUUGUGUGCGUGCGUUGGCAUUUACAUUCAAUU
.(((((....(((.(((((((..(((.((((((.......(((((((.....)))).))))))))).)))))))))).))).....))))) ( -26.91)
>DroSec_CAF1 14408 91 - 1
AAAUUGUUUCGAACGUCAACGAACACUCGCACAACUACUGAGCCCCAAAGUAUGUGUGCUUGUGUGCGUGCAUUGGCAUUUACAUUCAAUU
.(((((....(((.(((((((.((((..(((((..((((.........))))..)))))..)))).)))....)))).))).....))))) ( -22.20)
>DroSim_CAF1 14784 91 - 1
AAAUUGUUUCGAACGCCAACGAACACUCGCACAACUACUGAGCCCCAAAGUAUGUGUGCUUGUGUGCGUGCAUUGGCAUUUACAUUCAAUA
..((((....(((.(((((((.((((..(((((..((((.........))))..)))))..)))).)))....)))).))).....)))). ( -24.70)
>DroEre_CAF1 16232 87 - 1
AAAUUGCUCCGAGCGUCAGCGAGCACACAUACAAAUACUGAGCCACCAAGUAUGUGAGCUUCUGUGCG----UUGGCGUUUACAUUAAAAA
..........((((((((((((((.(((((((.................))))))).)))......))----))))))))).......... ( -24.53)
>DroYak_CAF1 11732 70 - 1
AAAUAGUGUCGAACGACAAUGAACG-----------------CUCCCAUGUAUGUGAGCUUGUGUGUG----UUGGCAUUUACAUUCAAUA
......((((....)))).((((.(-----------------(((.((....)).)))).((((.(((----....))).))))))))... ( -15.00)
>consensus
AAAUUGUUUCGAACGUCAACGAACACUCGCACAACUACUGAGCCCCAAAGUAUGUGUGCUUGUGUGCGUGC_UUGGCAUUUACAUUCAAUA
..............(((((((.((((..(((((..((((.........))))..)))))..)))).))....))))).............. (-10.34 = -12.10 +   1.76)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:50 2006