Locus 5713

Sequence ID 2L_DroMel_CAF1
Location 16,247,697 – 16,247,791
Length 94
Max. P 0.904968
window9050

overview

Window 0

Location 16,247,697 – 16,247,791
Length 94
Sequences 6
Columns 97
Reading direction forward
Mean pairwise identity 75.10
Mean single sequence MFE -34.33
Consensus MFE -19.18
Energy contribution -20.27
Covariance contribution 1.08
Combinations/Pair 1.21
Mean z-score -1.91
Structure conservation index 0.56
SVM decision value 1.04
SVM RNA-class probability 0.904968
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16247697 94 + 22407834
CGACUGGCGAUUGUCAACUCUUCGCCGCCCAUUUUACGCCACGGAAACGGCCGCUCCGUCCGGCAGUAAGUCUCCAUUGCCGGGGAGAACGAAG---
.(..((((((..(....)...))))))..).......(((..(....))))..((((..((((((((........)))))))))))).......--- ( -30.40)
>DroSec_CAF1 9795 97 + 1
CGACUGGCGAUUGUCAACUCUUCGCCACCCAUUUUACGCCACGGAAACGGCCGCUCCGUCCGGCAGUAAGUCUCCAUUGCCGGGCAGAGCGGAGAGC
.(..((((((..(....)...))))))..).......(((.((....)).((((((.((((((((((........)))))))))).)))))).).)) ( -43.00)
>DroSim_CAF1 10123 97 + 1
CGACUGGCGAUUGUCAACUCUUCGCCACCCAUUUUACGCCACGGAAACGGCCGCUCCGUCCGGCAGUAAGUCUCCAUUGCCGGGCAGAGCGGAGAGC
.(..((((((..(....)...))))))..).......(((.((....)).((((((.((((((((((........)))))))))).)))))).).)) ( -43.00)
>DroEre_CAF1 11391 90 + 1
CGACUGGCGAUUGUCAACUCUUCGCCGCCCAUUAUACGCUACGGAAACGACCGCUCCGUCCGGCAGUAAGUCUCCAUUGCCGGAGA-------GAGC
.(..((((((..(....)...))))))..)...........((....))...((((..(((((((((........)))))))))..-------)))) ( -32.50)
>DroYak_CAF1 6845 90 + 1
CGACUGGCGAUUGCCAACUCAUCGCCGCCCAUUUUACGCCACGGAAACGAUUGCUCCGUCCGGCAGUAAGUCUCCAUUGCCGGAGA-------GAGC
.(..(((((((.........)))))))..)...........((....))...((((..(((((((((........)))))))))..-------)))) ( -32.30)
>DroAna_CAF1 9623 76 + 1
CGACUGGCUAUCACAGGCCCUCCGCUC---------CGGCAUAUGUACUGGCUCUCCGGCC--CAGUGGAUACC---UGCCAGAGA-------AAUG
.....((((......)))).....(((---------.(((((((.((((((((....)).)--))))).)))..---)))).))).-------.... ( -24.80)
>consensus
CGACUGGCGAUUGUCAACUCUUCGCCGCCCAUUUUACGCCACGGAAACGGCCGCUCCGUCCGGCAGUAAGUCUCCAUUGCCGGAGA_______GAGC
....((((((...........))))))..........((..((....))...))....(((((((((........)))))))))............. (-19.18 = -20.27 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:49 2006