Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,242,970 – 16,243,090 |
Length | 120 |
Max. P | 0.699223 |
Location | 16,242,970 – 16,243,090 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.70 |
Mean single sequence MFE | -25.32 |
Consensus MFE | -16.34 |
Energy contribution | -16.82 |
Covariance contribution | 0.47 |
Combinations/Pair | 1.07 |
Mean z-score | -1.41 |
Structure conservation index | 0.65 |
SVM decision value | 0.35 |
SVM RNA-class probability | 0.699223 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16242970 120 + 22407834 GUCUGGUGGGAAUAUACAUAUGGUGUUGGAAAUCUAUUGCACAGAACAUGAAUUCUUAUGACCAUUUUUGUGCUUUAGUCUCGCCUUUGGCUUGUAUUUUUCCAAAAAGGACAGCUGCUU ((((..((((((.(((((...((((..(((...(((..(((((((((((((....))))).....))))))))..)))))))))).......))))).))))))....))))........ ( -33.20) >DroPse_CAF1 1 91 + 1 -----------------------------AAAUCUAUUGCACAGAACAUGAAUUCUUAUGGCCAUUUUUGUGCUUUAAACGCGCCUUGGGCUUGUAUUUCUCCAAAUACGAGAGCUGCUU -----------------------------.....((..(((((((((((((....))))).....))))))))..))...((((......(((((((((....))))))))).)).)).. ( -19.10) >DroWil_CAF1 1 91 + 1 -----------------------------AAAUCUAUUGCACAGAACAUGAAUUUUUGUGGCCAUUUUUGUGCUUUAGUCGCGCCUUUGGCUUAUAUUUUUCCAAAAAUGAAAGCUGCUU -----------------------------....(((..((((((((.(((............)))))))))))..)))....((....(((((.((((((....)))))).))))))).. ( -18.80) >DroYak_CAF1 2307 120 + 1 GUCUGGUGGGAAUAUACAUAUGGUGUUAGAAAUCUAUUGCACAGAACAUGAGUUCUUAUGACCAUUUUUGUGCUUUAGUCUCGCCUUUGGCUUGUAUUUUUCCAAAAAGGACAGCUGCUU ((((..((((((.(((((...((((..(((...(((..((((((((.(((.(((.....))))))))))))))..)))))))))).......))))).))))))....))))........ ( -35.00) >DroAna_CAF1 5286 120 + 1 AUCUGGUGGGAAUAUACAAAUGGUUUUGGAAAUCUAUUGCACAGAACAUGAAUUCUUAUGGCCAUUUUUGUGCUUUAGCCGCGCCUUUGGCUUGUACUUUUCCAAAAAUGAAAGUUGCUU .((...((((((..((((...((((..((....(((..(((((((((((((....))))).....))))))))..))).....))...))))))))..)))))).....))......... ( -26.70) >DroPer_CAF1 1 91 + 1 -----------------------------AAAUCUAUUGCACAGAACAUGAAUUCUUAUGGCCAUUUUUGUGCUUUAAACGCGCCUUGGGCUUGUAUUUCUCCAAAUACGAGAGCUGCUU -----------------------------.....((..(((((((((((((....))))).....))))))))..))...((((......(((((((((....))))))))).)).)).. ( -19.10) >consensus _____________________________AAAUCUAUUGCACAGAACAUGAAUUCUUAUGGCCAUUUUUGUGCUUUAGUCGCGCCUUUGGCUUGUAUUUUUCCAAAAACGAAAGCUGCUU .................................(((..(((((((((((((....))))).....))))))))..)))....(((...)))..(((.(((((.......))))).))).. (-16.34 = -16.82 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:48 2006