Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,242,539 – 16,242,631 |
Length | 92 |
Max. P | 0.987562 |
Location | 16,242,539 – 16,242,631 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 91.77 |
Mean single sequence MFE | -18.66 |
Consensus MFE | -17.12 |
Energy contribution | -16.68 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.15 |
Mean z-score | -1.73 |
Structure conservation index | 0.92 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16242539 92 - 22407834 UAAUUAUGAACGGCCCGAAUACCCCAUUAAAUGGUUGUAGAGGGCUUGUCGAAGUAGUUGAAAAAUAAACAACAUGUUUAAAUGUAAAAUGU (((((((..(((((((...(((.((((...))))..)))..)))).)))....))))))).....(((((.....)))))............ ( -18.40) >DroSec_CAF1 4687 89 - 1 UCAUUACGAACGGCCCGAAUACCCCAUUAAAUGGUUGUAGAGGGCUUGUCGAAGUAGUUGAAAAAUAAACAACAUGUUUAAAUAUAAAA--- ......(((..(((((...(((.((((...))))..)))..)))))..)))..............(((((.....))))).........--- ( -18.90) >DroSim_CAF1 5019 92 - 1 UCAUUACGAACGGCCCGAAUACCCCAUUAAAUGGUUGUAGAGGGCUUGUCGAAGUAGUUGAAAAAUAAACAACAUGUUUAAAUAUAAAAUCU ......(((..(((((...(((.((((...))))..)))..)))))..)))..............(((((.....)))))............ ( -18.90) >DroEre_CAF1 6300 89 - 1 UCAUUAUGAACGGCCCGAUUACCCCAUUAAAUGGUUGUAGAGGGCUUGUCAAAGUAGUUAAAACAUAAACAACAUGCUUAAAUGUAAAA--- .((((.(((..(((((..((((.((((...))))..)))).)))))..)))((((((((...........))).))))).)))).....--- ( -17.90) >DroYak_CAF1 1895 89 - 1 UCAUUAUGAACGGCCCGAAUACCCCAUUAAAUGGUUGUAGAGGGCCUAUGAAAGUAGUUGAAAAAUAAACCACAUGCUUAAAUGUAAAA--- ......(.((((((((...(((.((((...))))..)))..)))))(((....)))))).)..........((((......))))....--- ( -19.20) >consensus UCAUUAUGAACGGCCCGAAUACCCCAUUAAAUGGUUGUAGAGGGCUUGUCGAAGUAGUUGAAAAAUAAACAACAUGUUUAAAUGUAAAA___ ......(((..(((((...(((.((((...))))..)))..)))))..)))..((.(((........))).))................... (-17.12 = -16.68 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:47 2006