| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,239,803 – 16,239,923 |
| Length | 120 |
| Max. P | 0.630134 |
| Location | 16,239,803 – 16,239,923 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 93.33 |
| Mean single sequence MFE | -18.03 |
| Consensus MFE | -17.27 |
| Energy contribution | -17.60 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.52 |
| Structure conservation index | 0.96 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16239803 120 + 22407834 ACCACUACUCCCAAUCUAACUACAAGCACACAUGACUUUAAAGACCAGAUUAAUGACGAUGAUUCUAAAAGUCUGAAACAUUUAAUUAAGAUACUUUCAGACCUGGUAUAUUCAUUAAAU ...........................................(((((.........((....)).....((((((((.((((.....))))..)))))))))))))............. ( -14.70) >DroSec_CAF1 1871 120 + 1 ACCACUCAUUCCUUUCAAACUACAAACACGCAUGAUUUUAAAGACCAGAUUAAUGGCGAUGAUUCUAAAAGUCUGAAACAUUUAAUUAAGAUACUUUCAGACCUGGUCUAUUCAUUAAAU .........................................(((((((.........((....)).....((((((((.((((.....))))..)))))))))))))))........... ( -19.10) >DroSim_CAF1 1939 120 + 1 ACCACUACUCCCUAUCUAACUACAAACACAGAUGACUUUAAAGACCAGAUUAAUGGCGAUGAUUCUAAAAGUCUGAAACAUUUAAUUAAGAUACUUUCAGACCUGGUCUAUUCAUUAAAU ..............................(((((......(((((((.........((....)).....((((((((.((((.....))))..)))))))))))))))..))))).... ( -20.30) >consensus ACCACUACUCCCUAUCUAACUACAAACACACAUGACUUUAAAGACCAGAUUAAUGGCGAUGAUUCUAAAAGUCUGAAACAUUUAAUUAAGAUACUUUCAGACCUGGUCUAUUCAUUAAAU .........................................(((((((.........((....)).....((((((((.((((.....))))..)))))))))))))))........... (-17.27 = -17.60 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:46 2006