Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,763,365 – 1,763,458 |
Length | 93 |
Max. P | 0.941205 |
Location | 1,763,365 – 1,763,458 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 84.12 |
Mean single sequence MFE | -23.78 |
Consensus MFE | -15.04 |
Energy contribution | -15.12 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.12 |
Mean z-score | -2.84 |
Structure conservation index | 0.63 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.941205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1763365 93 - 22407834 ---CCACGUGGCUGCCAUUAAGUUGGGCCCAGGACCCAAAAACCUGGCCCACGAGUCUGUAAAACUUGCAGCACUUGCACA------AACUUUUCCACAACU ---....((((........((((((((((.(((.........)))))))).((((((((((.....))))).)))))....------)))))..)))).... ( -28.40) >DroSec_CAF1 20394 96 - 1 GCCCCACGUGGCUGCCAUUAAGUUGGGCCCAGCCCCCAAAAACCUGGCCCACGAGUCUGUAAAACUUGCAGCACUUGCACA------AACUUUUCCACAACU ((....(((((..((((.....(((((.......))))).....)))))))))((((((((.....))))).))).))...------............... ( -25.80) >DroEre_CAF1 20264 87 - 1 GCUGCACGUGGCUGCCAUUAAGUUGGC---------CAAAAACCUGGCCCACGAGUCUGUAAAACUUGCCACACUUGCAUA------AACUUUUCCACAACU ..((((.(((((.........((.(((---------((......))))).))((((.......)))))))))...))))..------............... ( -22.60) >DroYak_CAF1 27638 98 - 1 GCCCCACGUGGCUGCCAUUAAGUUGGCCCC----CCCAAAAACCUGGCCCACGAGUCUGUAAAACUUGCCACACUUGCACACUUUGCAACUUUUCCACAACU ......(((((..((((.....((((....----.)))).....)))))))))(((.((((((...(((.......)))...)))))))))........... ( -22.00) >DroAna_CAF1 19531 90 - 1 UCCCCACGUGACUGUCAUUAACUUGGCC------CCCAGAAACCUGGCCCACGAGUCACUAAAACUUGCAACACUUGCACA------AAGUUUUCACCAACU .......((((((((((......)))).------.((((....))))......)))))).((((((((((.....))))..------.))))))........ ( -20.10) >consensus GCCCCACGUGGCUGCCAUUAAGUUGGCCCC____CCCAAAAACCUGGCCCACGAGUCUGUAAAACUUGCAACACUUGCACA______AACUUUUCCACAACU ......(((((..((((.....((((.........)))).....))))))))).............(((.......)))....................... (-15.04 = -15.12 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:58 2006