Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,237,941 – 16,238,039 |
Length | 98 |
Max. P | 0.536531 |
Location | 16,237,941 – 16,238,039 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 85.03 |
Mean single sequence MFE | -18.98 |
Consensus MFE | -14.19 |
Energy contribution | -14.38 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.16 |
Mean z-score | -1.44 |
Structure conservation index | 0.75 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.536531 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16237941 98 - 22407834 UGGAAGCUGCUCUCUUUGAUGGAUAAACAUUUUUCCAUGUUGAUUGGGAGGAAUAUAAUUAAUUUUGUUAUCUUGAUUCGAUAUAAAAUCACUUCCAU ((((((.((...........(((..........)))((((((((..(((..((((..........)))).)))..).))))))).....)))))))). ( -19.10) >DroSec_CAF1 75 98 - 1 UGGAAGCUUGUCUCUUUGAUGCAUAAACAUUCUUCCAUGUUGAUUUGGAGAAAUAUAAUUGAUUUUGUUUUCUUGAUUCGAUAUAAAAUCUCUUCCAU ((((((..(((.((((..(......(((((......)))))...)..)))).))).....((((((((..((.......)).)))))))).)))))). ( -19.00) >DroSim_CAF1 71 98 - 1 UGGAAGCUUGUCUCUUUGAUGCAUAAACAUUCUUCCAUGUUGAUUUGGAGAAAUAUAAUUAAUUUUGUUUCCUUGAUUCGAUAUAUAAUAUCUUCCAU ((((((...(((.....)))................(((((((.(..(.((((((..........)))))).)..).))))))).......)))))). ( -18.30) >DroEre_CAF1 2043 98 - 1 UGGAAGCUGUUCAUUACGAUGUAUAAACACCCUUUUACGUCGAUUUGGAGAAAUAUAUUUCGUUUUGUUUCCUUGAUCCGAUAUAUAAUAUCUUUCAU .((((((..((((...(((((((.((......)).)))))))...))))((((....)))).....)))))).(((...(((((...)))))..))). ( -19.50) >consensus UGGAAGCUGGUCUCUUUGAUGCAUAAACAUUCUUCCAUGUUGAUUUGGAGAAAUAUAAUUAAUUUUGUUUCCUUGAUUCGAUAUAAAAUAUCUUCCAU ((((((...........((((......)))).....(((((((.(..(.((((((..........)))))).)..).))))))).......)))))). (-14.19 = -14.38 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:44 2006