Locus 5707

Sequence ID 2L_DroMel_CAF1
Location 16,237,267 – 16,237,374
Length 107
Max. P 0.768277
window9044

overview

Window 4

Location 16,237,267 – 16,237,374
Length 107
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.08
Mean single sequence MFE -21.41
Consensus MFE -17.68
Energy contribution -17.65
Covariance contribution -0.03
Combinations/Pair 1.10
Mean z-score -1.54
Structure conservation index 0.83
SVM decision value 0.52
SVM RNA-class probability 0.768277
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16237267 107 + 22407834
GGUAUACGUGGAUUUGCUGCAAGUUCAUCAUCAAG-------------UUAAUGUUCAUCUCUAUGAGUUAUAUAGGCUCUUUUUAAUCACAUUUUUUUAAAUUUCGACACGUAUACACA
.((((((((((((..((.....))..)))...(((-------------..(((((..........(((((.....))))).........)))))..))).........)))))))))... ( -21.81)
>DroPse_CAF1 223994 118 + 1
GGUAUACGUGGAUUUGCUGCAAAUUCAUAAAGAACACAUAUUGUAAUACGAGUAUUCAUCUCUUUGAGUUU--AUCGCUCUUAUUAAUUACUACCUUUUGAAAUUCGACACGUAUACACA
.(((((((((..((((...))))((((.((((...........(((((.(((((((((......)))))..--...)))).)))))........))))))))......)))))))))... ( -22.71)
>DroSec_CAF1 154558 105 + 1
GGUAUACGUGGAUUUGCUGCAAGUUCAUCAUCAAG-------------UUAAUGUUCAUCUCUAUGAGUUA--UAGGCUCUUUUUAAUCACAUUUUAUUAAAUUUCGACACGUAUACACA
.(((((((((((((((.((.........)).))))-------------))(((((..........((((..--...)))).........)))))..............)))))))))... ( -20.11)
>DroSim_CAF1 156636 105 + 1
GGUAUACGUGGAUUUGCUGCAAGUUCAUCAUCAAG-------------UUAAUGUUCAUCUCUAUGAGUUA--UAGGCUCUUUUUAAUCACAUUUUAUUAAAUUUCGACACGUAUACACA
.(((((((((((((((.((.........)).))))-------------))(((((..........((((..--...)))).........)))))..............)))))))))... ( -20.11)
>DroYak_CAF1 167180 104 + 1
GGUAUACGUGGAUUUGCUUCAAGUUCAUCAUCAAG-------------UUAAUGUUCAUCUCUAUGAGUUA--UAGACUCUU-UUAAUCAUAUUUUAUUAAAUUUUGACACGUAUACACA
.((((((((((((..((.....))..))).((((.-------------((((((...........(((((.--..)))))..-............))))))...)))))))))))))... ( -21.01)
>DroPer_CAF1 232989 118 + 1
GGUAUACGUGGAUUUGCUGCAAAUUCAUAAAGAACACAUAUUGUAAUACGAGUAUUCAUCUCUUUGAGUUU--AUCGCUCUUAUUAAUUACUACCUUUUGAAAUUCGACACGUAUACACA
.(((((((((..((((...))))((((.((((...........(((((.(((((((((......)))))..--...)))).)))))........))))))))......)))))))))... ( -22.71)
>consensus
GGUAUACGUGGAUUUGCUGCAAGUUCAUCAUCAAG_____________UUAAUGUUCAUCUCUAUGAGUUA__UAGGCUCUUUUUAAUCACAUUUUAUUAAAUUUCGACACGUAUACACA
.(((((((((((((((...))))))........................................(((((.....)))))............................)))))))))... (-17.68 = -17.65 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:43 2006