Locus 5705

Sequence ID 2L_DroMel_CAF1
Location 16,233,320 – 16,233,416
Length 96
Max. P 0.641385
window9040

overview

Window 0

Location 16,233,320 – 16,233,416
Length 96
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 75.52
Mean single sequence MFE -24.43
Consensus MFE -16.67
Energy contribution -16.92
Covariance contribution 0.25
Combinations/Pair 1.23
Mean z-score -1.09
Structure conservation index 0.68
SVM decision value 0.22
SVM RNA-class probability 0.641385
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16233320 96 + 22407834
GUGGUGUCCAACAAUGGAUAUGUUCUGCUGCAUCCUGAUCUACGACCCAUUGGGGUAAGUUGAAUGGUGUCAAACAGUGU-UUACA-------UAUAUAUAUAU
...(((((((....)))))))((((.(((..((((..((.........))..)))).))).)))).((((.((((...))-)))))-------).......... ( -20.00)
>DroVir_CAF1 216513 102 + 1
GUGGUUUCCAACAAUGGCUACAUGCUGCUGCAUCCGGAUCUGCGACCCAUUGGCGUAAGCAAGAUACUUUUAACCAGCCAGAAAAUUGU-AGUUACCU-AUUAU
((((((.........))))))((((....))))..((..((((((....(((((......................)))))....))))-))...)).-..... ( -19.35)
>DroSec_CAF1 150640 92 + 1
GUGGUGUCCAACAAUGGAUAUGUUCUGCUGCAUCCCGAUCUGCGACCCAUUGGGGUAAGUUGAUUGGUGUCAAAUGGUGU-UGAUA-------UAU----AUAU
(..(((((((....))))).......))..)...((((((.((.((((....))))..)).))))))((((((......)-)))))-------...----.... ( -23.81)
>DroSim_CAF1 152720 96 + 1
GUGGUGUCCAACAAUGGAUAUGUUCUGCUUCAUCCUGAUCUACGACCCAUUGGGGUAAGUUGAAUGGUAUCAAAUGGUGU-UGAUA-------UAUAUAUAUAU
...(((((((....)))))))((((.((((.((((..((.........))..)))))))).)))).(((((((......)-)))))-------).......... ( -23.10)
>DroEre_CAF1 154333 94 + 1
GUGGUGUCCAACAAUGGAUAUGUUCUGCUGCAUCCCGAUCUACGACCCAUUGGGGUAAGCUGAACCAUAUCAACCGGGGC-AUAUG---------UAUAUGUAU
...((((((.......(((((((((.(((..((((((((.........)))))))).))).))).)))))).....))))-))...---------......... ( -29.60)
>DroYak_CAF1 163100 95 + 1
GUGGUGUCCAACAAUGGAUAUGUUCUGCUGCAUCCCGAUCUACGACCCAUUGGGGUAAGCUGAACCAUAUCACC-------AUAUG-GUGAA-UUCUUAUACAU
((((((((((....)))))))((((.(((..((((((((.........)))))))).))).))))))).(((((-------....)-)))).-........... ( -30.70)
>consensus
GUGGUGUCCAACAAUGGAUAUGUUCUGCUGCAUCCCGAUCUACGACCCAUUGGGGUAAGCUGAAUGGUAUCAAACGGUGU_AUAUA_______UAUAUAUAUAU
...(((((((....)))))))((((.(((..((((((((.........)))))))).))).))))....................................... (-16.67 = -16.92 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:39 2006