Locus 5701

Sequence ID 2L_DroMel_CAF1
Location 16,223,819 – 16,223,913
Length 94
Max. P 0.601283
window9033

overview

Window 3

Location 16,223,819 – 16,223,913
Length 94
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 90.07
Mean single sequence MFE -28.47
Consensus MFE -22.55
Energy contribution -22.50
Covariance contribution -0.05
Combinations/Pair 1.21
Mean z-score -2.37
Structure conservation index 0.79
SVM decision value 0.14
SVM RNA-class probability 0.601283
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16223819 94 - 22407834
GUGGCAUAAUUUAUGGACU--GGCGCCCAUUUCAUGGGCUCUUGCUUGCCGGUAAAUUAUGGCACACGUACGUGUCCUUUUGUGUCCUUGUAUAAU
(((.((((((((((((...--(((((((((...))))))....)))..)).)))))))))).)))..(((((.(..(......)..).)))))... ( -31.00)
>DroSec_CAF1 141088 94 - 1
GUGGCAUAAUUUAUGGACU--GGCGCCCAUUUCAUGGGCUUUUGUUUCCCGGUAAAUUAUGGCACCCGUACGUGUCCUUUUGUGUCCUUGUAUAAU
(((.((((((((((.(...--(((((((((...))))))....)))...).)))))))))).)))..(((((.(..(......)..).)))))... ( -26.90)
>DroSim_CAF1 142744 94 - 1
GUGGCAUAAUUUAUGGACU--GGCGCCCAUUUCAUGGGCUUUUGCUUCCCGGUAAAUUAUGGCACCCGUACGUGUCCUUUUGUGUCCUUGUAUAAU
(((.((((((((((.(...--(((((((((...))))))....)))...).)))))))))).)))..(((((.(..(......)..).)))))... ( -29.40)
>DroEre_CAF1 144367 94 - 1
GUGGCAUAAUUUAUGGACU--GGCGCCCAUUUCAUGGGCUUUUGCUUCCUGGUAAAUUAUGGCACCCGUACGUGUCCUUUUGUGUCCUUGUAUAAU
(((.(((((((((((((..--(((((((((...))))))....))))))..)))))))))).)))..(((((.(..(......)..).)))))... ( -29.00)
>DroYak_CAF1 152287 94 - 1
GUGGCAUAAUUUAUGGACU--GGUGCCCAUUUCAUGGGCUUUUGCUUCCCGGUAAAUUAUGGCACCCGUACGUGUCCUUUUGUGUCCUUGUAUAAU
(((.((((((((((.(...--(((((((((...))))))....)))...).)))))))))).)))..(((((.(..(......)..).)))))... ( -28.00)
>DroAna_CAF1 135579 96 - 1
GUGCCAUAAUUUAUGGACUAUAGCGCCCACUUCAUGGCCUCUUGUUUCCCGGUAAAUUACGGCCCCAGCACGUGCCCUCUGGCAUCCUCUGGUACA
..(((.(((((((((((....((.(((........)))..))....)))..)))))))).))).((((...(((((....)))))...)))).... ( -26.50)
>consensus
GUGGCAUAAUUUAUGGACU__GGCGCCCAUUUCAUGGGCUUUUGCUUCCCGGUAAAUUAUGGCACCCGUACGUGUCCUUUUGUGUCCUUGUAUAAU
(((.((((((((((.(.....((((((((.....)))))....)))...).)))))))))).)))..(((((.(..(......)..).)))))... (-22.55 = -22.50 +  -0.05)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:33 2006