Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 1,763,099 – 1,763,196 |
Length | 97 |
Max. P | 0.823242 |
Location | 1,763,099 – 1,763,196 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 84.49 |
Mean single sequence MFE | -25.86 |
Consensus MFE | -20.76 |
Energy contribution | -20.76 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.10 |
Structure conservation index | 0.80 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.823242 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1763099 97 + 22407834 CACUCUGCGGUCAUGAGACACUUGCUCAUCCUGGUGCUCCAUC------UCCAUCUGCUGCGCCAUCUCACAUCCCAGGCAGCGACCACUGACCUCAGGCCCA ...((((.((((((((((.............((((((..((..------......))..))))))))))).......((......))..))))).)))).... ( -24.61) >DroSec_CAF1 20122 103 + 1 CACUCUGCGGUCAUGAGGCACUUGCUCAUCCUGGUGCUCCAUCUCCAUCUCCAUCUGCUGCUCCAUCUCACACUCCAGGCAGCGACCACUGACCUCAGGCCCA ......(((((((((..(((((..........)))))..)))..............((((((...............)))))))))).(((....)))))... ( -27.96) >DroYak_CAF1 27378 91 + 1 CACUCUGCGGUCAUGAGGCACUUGCUCAUCCUGGUGCUCCAUC------ACCAUCUCCGG------CUCCUACUCCCGGCAGCAACCACUGACCUCAGUCCCA ....(((.(((((.(.((...(((((.....(((((......)------))))...((((------.........)))).))))))).)))))).)))..... ( -25.00) >consensus CACUCUGCGGUCAUGAGGCACUUGCUCAUCCUGGUGCUCCAUC______UCCAUCUGCUGC_CCAUCUCACACUCCAGGCAGCGACCACUGACCUCAGGCCCA ....(((.(((((((((.(....)))))...(((((((((.....................................)).))).)))).))))).)))..... (-20.76 = -20.76 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:57 2006