| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,213,576 – 16,213,672 |
| Length | 96 |
| Max. P | 0.938437 |
| Location | 16,213,576 – 16,213,672 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 76.35 |
| Mean single sequence MFE | -18.85 |
| Consensus MFE | -13.92 |
| Energy contribution | -13.87 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.74 |
| SVM decision value | 1.27 |
| SVM RNA-class probability | 0.938437 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16213576 96 - 22407834 CAUCUUGGCAUGUUUGCUAUUUGUGGUUUAUAUGCCAAUAAAUAAA-AACCUUUGCCCUAGCC-CAAA------ACAACACAACA-----CAACACAUUUUAAAGUAUG ....(((((((((..((((....))))..)))))))))........-................-....------...........-----................... ( -15.00) >DroVir_CAF1 191766 86 - 1 CAUCUUGGCAUGUUUGCCAUUUGUGGUUUAUAUGCCAAUAAAUAAA-AACCUUUGCCA---------A--------CACG-----GUCGACAACAAAUUUUCAAGUGUG ....(((((((((..((((....))))..)))))))))........-...........---------(--------(((.-----...................)))). ( -19.25) >DroGri_CAF1 142575 85 - 1 UUUCUUGGCAUGUUUGCCAUUUGUGGUUUAUAUGGCAAUAAAUAAAAAACCUUUGCCA---------G----------CA-----GUCGACAACAAAUUUUAAAGUGUG .....(((((....)))))(((((.(((.((.((((((..............))))))---------.----------..-----)).))).)))))............ ( -18.34) >DroYak_CAF1 141232 107 - 1 CAUCUUGCCAUGUUUGCUAUUUGUGGUUUAUAUGCCGAUAAAUAAA-AACCUUUGCCCUAGCC-CUAGCCCAAAGCAACAAAGCACAACACAACACAUUUUAAAGUAUG .....(((..((((.((((((((((((......))).)))))))..-....((((..(((...-.)))..))))))))))..)))........................ ( -16.30) >DroMoj_CAF1 216718 88 - 1 CAUCUUGGCAUGUUUGCCAUUUGUGGUUUAUAUGCCAAUAAAUAAA-AACCUUUGCCA---------A------ACAACA-----GUCGACAGCAAAUUUUAAAGCCAG ....(((((((((..((((....))))..)))))))))....((((-(...(((((..---------.------((....-----)).....))))))))))....... ( -19.10) >DroAna_CAF1 126157 99 - 1 CAUCUUGGCAUGUUUGCUAUUUGUGGUUUAUAUGCCAAUAAAUAAA-AACCUUUGGCCUGGCCCCAAA------ACAACAAG---CCGAGCAGCACAUUUUAAAGUGUG ....(((((((((..((((....))))..)))))))))........-....((((((.((........------....)).)---)))))...((((((....)))))) ( -25.10) >consensus CAUCUUGGCAUGUUUGCCAUUUGUGGUUUAUAUGCCAAUAAAUAAA_AACCUUUGCCA_________A______ACAACA_____GUCGACAACAAAUUUUAAAGUGUG ....(((((((((..((((....))))..)))))))))....................................................................... (-13.92 = -13.87 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:30 2006