Locus 5697

Sequence ID 2L_DroMel_CAF1
Location 16,209,518 – 16,209,617
Length 99
Max. P 0.554362
window9026

overview

Window 6

Location 16,209,518 – 16,209,617
Length 99
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 81.93
Mean single sequence MFE -25.73
Consensus MFE -19.34
Energy contribution -18.32
Covariance contribution -1.02
Combinations/Pair 1.23
Mean z-score -1.31
Structure conservation index 0.75
SVM decision value 0.04
SVM RNA-class probability 0.554362
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16209518 99 - 22407834
AUUUUCC----GCCCAUUUCCAACGCCCAUGUGGGCGAGACAAAAAUGUUUGUGAAAUGAGCCGUAAUAAGCUGAAAAUGCCUUAUGGUUUCGGUUGUUGCCU
.......----((.(((((((..(((((....)))))(((((....)))))).)))))).)).(((((((.(((((...(((....))))))))))))))).. ( -31.90)
>DroPse_CAF1 182989 95 - 1
CUCUUAUGCUCCCCCAUUUUC--------UGUGCGGAGAACAAACAUUUUUGUGAAAUGAGCCGCAAUAAGUUGAAAAUGCUUUAUGGUUUCAAUUGUUGCUU
.......((((.(((((....--------.))).))...(((((....))))).....)))).(((((((.(((((...(((....))))))))))))))).. ( -19.40)
>DroSec_CAF1 126973 99 - 1
CUUUUCC----GCCCAUUUCCAACGCCCAUGUGGGCGAGACAAAAAUGUUUGUGAAAUGAGCCGUAAUAAGCUGAAAAUGCCUUAUGGUUUCGGUUGUUGCCU
.......----((.(((((((..(((((....)))))(((((....)))))).)))))).)).(((((((.(((((...(((....))))))))))))))).. ( -31.90)
>DroEre_CAF1 130510 99 - 1
CUUUUCC----GCCCCUUUGCAACGCCCAUGUGGGCGGGACAAAAAUGUUUGUGAAAUGAGCCGUAAUAAGCUGAAAAUGCCUUAUGGUUUCGGUUGUUGCCU
.......----(((..((..(..(((((....)))))(((((....))))))..))..).)).(((((((.(((((...(((....))))))))))))))).. ( -27.80)
>DroYak_CAF1 137341 93 - 1
CUUUUCC----GCCUCUUU------CCCAUGUGGGCGGGACAAAAAUGUUUGUGAAAUGAGCCGUAAUAAGCUGAAAAUGCCUUAUGGUUUCGGUUGUUGCCU
....(((----(((((...------.....).)))))))(((((....)))))..........(((((((.(((((...(((....))))))))))))))).. ( -24.00)
>DroPer_CAF1 193282 95 - 1
CUCUUAUGCUCCCCCAUUUUC--------UGUGCGGAGAACAAACAUUUUUGUGAAAUGAGCCGCAAUAAGUUGAAAAUGCUUUAUGGUUUCAAUUGUUGCUU
.......((((.(((((....--------.))).))...(((((....))))).....)))).(((((((.(((((...(((....))))))))))))))).. ( -19.40)
>consensus
CUUUUCC____GCCCAUUUCC____CCCAUGUGGGCGGGACAAAAAUGUUUGUGAAAUGAGCCGUAAUAAGCUGAAAAUGCCUUAUGGUUUCGGUUGUUGCCU
...........((((((.............))))))...(((((....)))))..........(((((((.(((((...(((....))))))))))))))).. (-19.34 = -18.32 +  -1.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:27 2006