| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,207,427 – 16,207,538 |
| Length | 111 |
| Max. P | 0.651813 |
| Location | 16,207,427 – 16,207,538 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 85.59 |
| Mean single sequence MFE | -25.38 |
| Consensus MFE | -16.54 |
| Energy contribution | -16.66 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.651813 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16207427 111 + 22407834 AAACUAGUAC----ACUAUAGGCAA---AUUAAAAAGGACUUUAAUUUUCUAUUAUCCUUUUUUAUACUUAUAGCGUAUAGGUUUAGGUCUCCGGUAUGUUGAGCCGUAGUCCUAGAC ...(((.(((----.(((((((...---...((((((((...((((.....))))))))))))....))))))).))))))(((((((.((.((((.......)))).)).))))))) ( -32.40) >DroSec_CAF1 124882 111 + 1 AAACUAGUAC----ACUAUAGGCAA---AUUAAAAAGGACUUACAUUUUCUAUUAUCCUUUUUUAUACUUAUAGCGUAUAGGUUUAGGUCUCCGAUAUGUUGAGCCGUAGUCCUAGAC ...(((.(((----.(((((((...---...((((((((................))))))))....))))))).))))))(((((((.((.((...........)).)).))))))) ( -25.69) >DroSim_CAF1 126375 111 + 1 AAACUACUAC----ACUAUAGGCAA---AUUAAAAAGGACUUCAAUUUUCUAUUAUCCUUUUUUAUACUUAUAGCGUAUAGGUUUAGGUCUCCGGUAUGUUGAGCCGUAGUCCUAGAC ...(((.(((----.(((((((...---...((((((((................))))))))....))))))).))))))(((((((.((.((((.......)))).)).))))))) ( -31.19) >DroEre_CAF1 128420 111 + 1 AAACCAGUAC----ACUGUAGGCAA---AUUAGAAAGGGCCUUUAUUUUCUAUUAUCCUUUUUUAUACAAAUAGCGCAUAGGUUUAGCCCACAGCCAUGUGGACCCUUAGUCCUAGAU ........((----(((((.(((..---..(((((((((....((.....))....))))))))).......(((......)))..))).))))...)))((((.....))))..... ( -18.90) >DroYak_CAF1 135178 115 + 1 AAACCAGUACACACACUGUAGGCAAAAAAAUAAAAAGAACUUUUAUUUUCUAUUAUCCUUUUUUAUACUAAUAGCGUAUAGGUUUAGCC---AGCUAUGUGGAGUCUUAGUCCUAGAU ...........((((..((.(((...(((((((((.....)))))))))............(((((((.......)))))))....)))---.))..))))..((((.......)))) ( -18.70) >consensus AAACUAGUAC____ACUAUAGGCAA___AUUAAAAAGGACUUUAAUUUUCUAUUAUCCUUUUUUAUACUUAUAGCGUAUAGGUUUAGGUCUCCGCUAUGUUGAGCCGUAGUCCUAGAC ...............(((((.((........((((((((................))))))))..........)).)))))(((((((.((.((...........)).)).))))))) (-16.54 = -16.66 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:26 2006