Locus 569

Sequence ID 2L_DroMel_CAF1
Location 1,762,937 – 1,763,043
Length 106
Max. P 0.564628
window940

overview

Window 0

Location 1,762,937 – 1,763,043
Length 106
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 69.62
Mean single sequence MFE -28.97
Consensus MFE -9.35
Energy contribution -9.25
Covariance contribution -0.10
Combinations/Pair 1.57
Mean z-score -1.89
Structure conservation index 0.32
SVM decision value 0.06
SVM RNA-class probability 0.564628
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1762937 106 - 22407834
AAACUUCAGGAAAACUUCG-GUUUCUGCUAACAUGUUGCGGCUGGCAAAAUGUCGCCGGCAGGAAA------------ACUUGG-CGAAAAUGUCGAGUUGAACUGGGCUUAAAUGCCUC
......(((((..((....-)))))))...........((((.(((.....))))))).(((...(------------((((((-(......))))))))...)))(((......))).. ( -31.80)
>DroPse_CAF1 23374 113 - 1
CCACUGGAAAGAAACUUCA-GUUUUUGUCAACAUGUUGCGGCUGGCAGAAUUUCCACAAGAGAAGAGACAAAAAAUAAACUUUUAGUAAAGUGUGGAGUAACAUUUGGAUAACA------
..((((((.......))))-))..(((((...(((((((.(....)......((((((....(((((............))))).......)))))))))))))...)))))..------ ( -22.20)
>DroSec_CAF1 19980 86 - 1
AAACUUCAGGAAAAC----------UGCUAACAUGUUGCGGUUGGCAAAAUGUCGCCGGCAGGAAA------------ACUUGG-CGAAAAUGUCGAGUUGA-----------AUGCCUC
............(((----------(((.........))))))(((........)))((((....(------------((((((-(......))))))))..-----------.)))).. ( -26.40)
>DroEre_CAF1 19836 106 - 1
AAACUUCAGGAAAACUUCG-GUUUUUGCUAACAUGUUGCGGCUGGCAAAAUGUCGCCAGCAGGAAA------------ACUUGG-CGAAAAUGUCGAGUUGAACUGGGCUUAAAUGCCUC
......(((...((((.((-(((((((((((....((.(.((((((........)))))).).)).------------..))))-)))))))..))))))...)))(((......))).. ( -35.40)
>DroYak_CAF1 27214 106 - 1
AAACUUCAGGAAAACUUCG-GUUUUUGCUAACAUGUUGCGGCUGGCAAAAUGUCGCCAGCAGGAAA------------ACUUGG-CGAAAAUGUCGAGUUGAACUGGGCUUAAAUGCCCC
.........((((((....-))))))((.........)).((((((........))))))((...(------------((((((-(......))))))))...))((((......)))). ( -35.70)
>DroAna_CAF1 19148 94 - 1
CAAGUUCUGGAAAACUUUGGGCUUUUGCCAACAUGUUGCGGCUGGGAAAAUGUCGUCAGCAGGAUA------------ACUA---CAAAAAACUUAGUUUUC-----------AUACCUU
.........(((((((..((((....)))....(((((((((.........)))).))))).....------------....---.......)..)))))))-----------....... ( -22.30)
>consensus
AAACUUCAGGAAAACUUCG_GUUUUUGCUAACAUGUUGCGGCUGGCAAAAUGUCGCCAGCAGGAAA____________ACUUGG_CGAAAAUGUCGAGUUGAACUGGGCUUAAAUGCCUC
.....(((((...............(((.........)))((((((........))))))...................))))).................................... ( -9.35 =  -9.25 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:56 2006