| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,169,263 – 16,169,383 |
| Length | 120 |
| Max. P | 0.899550 |
| Location | 16,169,263 – 16,169,383 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 77.49 |
| Mean single sequence MFE | -43.17 |
| Consensus MFE | -18.74 |
| Energy contribution | -18.35 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.55 |
| Structure conservation index | 0.43 |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.899550 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16169263 120 + 22407834 CAUUGCAAACAUUCCGGAAACCAUGAACGGCACCACAAUUGGACCAAGUGGAGCUGGUGGCCAAAAAGGUGGUGCUGCUGCAGGUGCCGCUGGCCAAAAGAGACAACAACGCCGUGGAAA ...........(((((....).....(((((.((((...........))))..((..((((((.....((((..((......))..))))))))))..))..........))))))))). ( -40.70) >DroVir_CAF1 132528 108 + 1 CAUUGCUAACAUUCCGGAAACUAUGAACGGCACCACAAUUGGACCCAGCGGAGCCGGUGGACAAAAAGCGGC---C---------GCUGCCGGCCAAAAGCGGCCGCAGCGACGCGGCAA ..(((((.....((((....)......((((.(((....))).((....)).))))..)))......(((..---(---------(((((.((((......)))))))))).)))))))) ( -43.70) >DroGri_CAF1 95344 111 + 1 CAUUGCAAACAUUCCGGAAACAAUGAACGGCACCACAAUUGGACCGAGUGGCGCCGGUGGCCAAAAAGCGGGUGCU---------GCUGCCGGCCAAAAGCGACCGCAGCGACGCGGAAA ..((((...((((..(....)))))..((((.((((...........)))).)))).(((((....(((((...))---------)))...)))))...))))((((......))))... ( -39.70) >DroWil_CAF1 126603 108 + 1 CAUUGCAAACAUUCCGGAAACAAUGAAUGGCACCACAAUUGGGCCAAGUGGUGCCGGCGGUCAGAAACCUGGCGCU------------GCCGGUCCAAAGAGGCCCCAGCGACGGGGCAA ...(((...(((((.(....)...))))))))......(((((((..(..(((((((.(........)))))))).------------.).)))))))....(((((......))))).. ( -43.90) >DroAna_CAF1 82946 114 + 1 CAUUGCAAACAUUCCGGAAACUAUGAACGGCACCACCAUUGGACCCAGUGGUGCGGGUGGCCAAAAAG------CUGCCCCUGGUGCCGGCGGCCAAAAGCGUCCUCAACGGCGGGGCAA ...(((...(((...(....).)))..((((((((((((((....)))))))..(((..((......)------)..)))..))))))))))(((.....((((......)))).))).. ( -47.90) >DroPer_CAF1 121168 114 + 1 CAUUGCAAACAUUCCGGAAACCAUGAACGGCACAACAAUCGGACCCAGCGGCGCUGGUGGCCAAAAAGCUAAUGCCGCUG------CAGCCGGCCAGAAAAGGCCACAGCGCCGUGGCAA ..((((...(((...(....).))).(((((.(.......((...((((((((....((((......)))).))))))))------...))((((......))))...).))))).)))) ( -43.10) >consensus CAUUGCAAACAUUCCGGAAACAAUGAACGGCACCACAAUUGGACCCAGUGGAGCCGGUGGCCAAAAAGCUGGUGCU_________GCCGCCGGCCAAAAGAGGCCACAGCGACGCGGCAA ....((...(((...(....).)))..((((.((((...........)))).))))))((((.............................))))........((((......))))... (-18.74 = -18.35 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:11 2006