| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,168,060 – 16,168,151 |
| Length | 91 |
| Max. P | 0.625310 |
| Location | 16,168,060 – 16,168,151 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 72.23 |
| Mean single sequence MFE | -35.72 |
| Consensus MFE | -21.68 |
| Energy contribution | -21.96 |
| Covariance contribution | 0.29 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.625310 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16168060 91 - 22407834 UGCCGCUGGAACUGGUUGGUCCUGUU----G-----------GUC---CUGCGGGACUUGUCGCCGGUCCUGUGGCUAUUCCGGUUAGAGAUCCUGACUCACUGCCUCC .(((((.(((.(((((.((((((((.----.-----------...---..))))))))....)))))))).)))))......(((..(((.......)))...)))... ( -36.40) >DroSec_CAF1 85034 88 - 1 UGCCGCUGGAACUGGUUGGUCCUGCU----G-----------------CUGCGGGACUUGUCGCCGGUCCUGUGGCUAUUCCGGUUAGAGAUCCUGACUCACUGCCUCC .(((((.(((.(((((.((((((((.----.-----------------..))))))))....)))))))).)))))......(((..(((.......)))...)))... ( -38.80) >DroSim_CAF1 86715 88 - 1 UGCCGCUGGAACUGGUUGGUCCUGCU----G-----------------CUGCGGGACUUGUCGCCGGUCCUGUGGCUAUUCCGGUUAGAGAUCCUGACUCACUGCCUCC .(((((.(((.(((((.((((((((.----.-----------------..))))))))....)))))))).)))))......(((..(((.......)))...)))... ( -38.80) >DroEre_CAF1 88404 88 - 1 UGGCGCUGGAGCUGGAGGGUCCUGCU----G-----------------CUCCGGGACUUGUUGCCGUUCCUGUUGCAACACCGGUUAGAGAUCCCGACUCACUGCCUCC .(((...(((((.(.((....)).).----)-----------------))))(((((((...((((....(((....))).))))..))).))))........)))... ( -32.00) >DroYak_CAF1 93404 88 - 1 UGCCGCUGGAGCUGGAGGGCCCUACU----G-----------------CUCCGGGACUUGUCGCCGGUCCUGGGGCUAUUCCAGUUAGAGAUCCUGACUCACUGGCUCC ....((..((((((((((((((((..----.-----------------..((((((....)).))))...))))))).)))))))).(((.......))).)..))... ( -37.30) >DroAna_CAF1 81754 103 - 1 GGCUUCCGCCGUUCGAAGGUGCCGCCGACUGGCCCGGACUCGUGCCUGACCCGGAAACAGACCCGGAUCCUGAGGCUAUUCCUGCUA------CUAGGUCACUUGCCCC (((.(((((((.(((..(....)..))).))))..)))...(((((((..((((........)))).......(((.......))).------.)))).)))..))).. ( -31.00) >consensus UGCCGCUGGAACUGGAUGGUCCUGCU____G_________________CUCCGGGACUUGUCGCCGGUCCUGUGGCUAUUCCGGUUAGAGAUCCUGACUCACUGCCUCC .(((((.((.(((((..(((((((...........................))))))).....))))))).)))))......((((((.....)))))).......... (-21.68 = -21.96 + 0.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:08 2006