Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,166,802 – 16,166,900 |
Length | 98 |
Max. P | 0.607873 |
Location | 16,166,802 – 16,166,900 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 90.95 |
Mean single sequence MFE | -39.68 |
Consensus MFE | -30.91 |
Energy contribution | -31.97 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.15 |
Mean z-score | -2.66 |
Structure conservation index | 0.78 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607873 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16166802 98 - 22407834 UGCCGAUGUGGUUAGUGGGUUAGCCGGAACCGGAAGCGUUAUCGUCGGAGAUCGAUGCUGAUGAUGGUGUUCCGGCUUGACAACGACCACUUCCAAAU ....((.((((((.((..((((((((((((((....))((((((((((.........)))))))))).)))))))).)))).)))))))).))..... ( -38.50) >DroSec_CAF1 83801 98 - 1 UGCCGAUGUGGUAAGUGGGUUAGCCGGAACCGGAAGCGUUAUCGUCGGCGAUCGAUGCUGAUGAUGGUGUUCCGGUUUGACAACGACCACUUCCAAAU ....((.(((((...((((....)).(((((((((.((..((((((((((.....))))))))))..)))))))))))..))...))))).))..... ( -41.40) >DroSim_CAF1 85471 98 - 1 UGCCGAUGUGGUUAGUGGGUUAGCCGGAACCGGAAGCGUUAUCGUCGGCGAUCGAUGCUGAUGAUGGUGUUCCGGUUUGACAACGACCACUUCCAAAU ....((.((((((..((((....)).(((((((((.((..((((((((((.....))))))))))..)))))))))))..))..)))))).))..... ( -42.40) >DroEre_CAF1 87141 98 - 1 UGCCGAUGUGGUUAGUGGGUUAGCUGGAACCGGCAGCGUUAUCGUCGGCGAUCGAUGCUGAUGAUGGUGUUCCGGCUUGACAAUGACCACUUCCAAAU ....((.(((((((....((((((((((((((.(((((((((((....)))).)))))))....))))..)))))).))))..))))))).))..... ( -41.10) >DroYak_CAF1 92260 98 - 1 UGCCGAUGUGGUUAGUGGGUAAGCUGGAACCGGAAGCGUUACCGUCGGCGAUCGAUGCUGAUGAUGGUGUUCCGCUUUGGCAACGACCACUUCCAAAU ........(((..(((((....((..((..(((((.((..(.((((((((.....)))))))).)..))))))).))..)).....))))).)))... ( -33.60) >DroAna_CAF1 79953 98 - 1 UGCCGAUGUGGUCAGUGGUGUUGUGGGCACCGGCAGCGUUAUCGUCGGAGACCGGUGCUGGUUAUGGUGCUCCGGCUUGACCAUGACCACCUCCAAAU ....((.(((((((.((((((((.((((((((.((((...((((..(....)))))))))....))))))))))))...))))))))))).))..... ( -41.10) >consensus UGCCGAUGUGGUUAGUGGGUUAGCCGGAACCGGAAGCGUUAUCGUCGGCGAUCGAUGCUGAUGAUGGUGUUCCGGCUUGACAACGACCACUUCCAAAU ....((.((((((..((....(((((((((((....))((((((((((((.....)))))))))))).)))))))))...))..)))))).))..... (-30.91 = -31.97 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:07 2006