Locus 5682

Sequence ID 2L_DroMel_CAF1
Location 16,158,028 – 16,158,125
Length 97
Max. P 0.584188
window9004

overview

Window 4

Location 16,158,028 – 16,158,125
Length 97
Sequences 6
Columns 108
Reading direction reverse
Mean pairwise identity 84.64
Mean single sequence MFE -26.90
Consensus MFE -21.17
Energy contribution -21.65
Covariance contribution 0.48
Combinations/Pair 1.28
Mean z-score -1.75
Structure conservation index 0.79
SVM decision value 0.10
SVM RNA-class probability 0.584188
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16158028 97 - 22407834
AGGACCUUUCGCUGUCCAUGGUGAGUGCUAGGG-----------AUACGGAAGUGAAGAAGUUGGAGAGCCGAAAAGAAAAUGGCGCGCGCAAAAAGCGGAAGUGCAC
..(..((((((((.......(((.((((((...-----------.(((....)))......((((....))))........)))))).)))....))))))))..).. ( -28.90)
>DroSec_CAF1 74944 97 - 1
AGGACCUUUCGCUGUCCAUGGUGAGUGCUAGGG-----------AUACGGAAGUGAAGAAGUUGGAGAGCCGAAAAGAAAAUGGCGCGCGCAAAAAGCGGAAGUGCAC
..(..((((((((.......(((.((((((...-----------.(((....)))......((((....))))........)))))).)))....))))))))..).. ( -28.90)
>DroSim_CAF1 76677 97 - 1
AGGACCUUUCGCUGUCCAUGGUGAGUGCUAGGG-----------AUACGGAAGUGAAGAAGUUGGAGAGCCGAAAAGAAAAUGGCGCGCGCAAAAAGCGGAAGUGCAC
..(..((((((((.......(((.((((((...-----------.(((....)))......((((....))))........)))))).)))....))))))))..).. ( -28.90)
>DroEre_CAF1 77621 97 - 1
AGGACCUUUCGCUGUCCAUGGUGAGUGCUGGGG-----------AUACGGAAGUGAAGAAGUUGGAGAGCCGAAAAGAAAAUGGCGCGCGCAAAAAGCGGAAGUGCAC
..(..((((((((.......(((.(((((....-----------.(((....)))......((((....)))).........))))).)))....))))))))..).. ( -27.70)
>DroYak_CAF1 83077 97 - 1
AGGACCUUUAGUUGUCCAUGGUGAGUGCUAGGG-----------AUACGGAAGUGAAGAAGUUGGAGAGUCGAAAAGAAAAUAGCGCGCGCAAAAAGCGGAAGUGCAC
..(((((((((..((((.((((....)))).))-----------))((....)).......)))))).)))............((((.(((.....)))...)))).. ( -25.60)
>DroPer_CAF1 103191 94 - 1
ACUU-------CUUUGCACGGUGAGUGUUGUGGCGCAGAGGAGUAUUCGGAGGGGA-----UGGGGAAGCUGAAAAGAAAAUGGCG--CGCAGAAAGCGGAAGUGCAC
....-------...(((((.....((.((.((((((.......(((((.....)))-----))......((....))......)))--).)).)).))....))))). ( -21.40)
>consensus
AGGACCUUUCGCUGUCCAUGGUGAGUGCUAGGG___________AUACGGAAGUGAAGAAGUUGGAGAGCCGAAAAGAAAAUGGCGCGCGCAAAAAGCGGAAGUGCAC
..(..((((((((.......(((.((((((...............(((....)))......((((....))))........)))))).)))....))))))))..).. (-21.17 = -21.65 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:05 2006