Locus 5681

Sequence ID	2L_DroMel_CAF1
Location	16,157,306 – 16,157,404
Length	98
Max. P	0.795136

overview

Window 2

Location	16,157,306 – 16,157,404
Length	98
Sequences	3
Columns	98
Reading direction	forward
Mean pairwise identity	95.24
Mean single sequence MFE	-18.91
Consensus MFE	-16.69
Energy contribution	-17.69
Covariance contribution	1.00
Combinations/Pair	1.00
Mean z-score	-2.03
Structure conservation index	0.88
SVM decision value	0.31
SVM RNA-class probability	0.684139
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16157306 98 + 22407834
AAGAGGUUCAAGCUGUAUAUAGACACAUCGACACUUCCUACAAAAAGAAUAAAUAACCUUUUAUAAUUGGUACUUGAACAAGCCAAUAAUGGAAACCU
..(((((((....(((......)))....)).))))).....................((((((.((((((..........)))))).)))))).... ( -11.70)
>DroSec_CAF1 74226 98 + 1
AAGAGGUUCAAGCUUUAUGUAGACACUUCGACACUCUCUACAAAAAGAAUAAAUAACCUUUUGUAAUUGGUACUUGAACAAGCCAAUAAUGGCAACCU
.....(((((((((((.((((((.............)))))).))))........(((..........))).)))))))..((((....))))..... ( -22.52)
>DroSim_CAF1 75959 98 + 1
AAGAGGUUCAAGCUUUAUGUAGACACUUCGACACUCUCUACAAAAAGAAUAAAUAACCUUUUGUAAUUGGUACUUGAACAAGCCAAUAAUGGCAACCU
.....(((((((((((.((((((.............)))))).))))........(((..........))).)))))))..((((....))))..... ( -22.52)
>consensus
AAGAGGUUCAAGCUUUAUGUAGACACUUCGACACUCUCUACAAAAAGAAUAAAUAACCUUUUGUAAUUGGUACUUGAACAAGCCAAUAAUGGCAACCU
.....(((((((((((.(((((...............))))).))))........(((..........))).)))))))..((((....))))..... (-16.69 = -17.69 +   1.00)

alignment

secondary structure

dotplot

Window 3

Location	16,157,306 – 16,157,404
Length	98
Sequences	3
Columns	98
Reading direction	reverse
Mean pairwise identity	95.24
Mean single sequence MFE	-22.77
Consensus MFE	-22.04
Energy contribution	-21.93
Covariance contribution	-0.11
Combinations/Pair	1.07
Mean z-score	-1.77
Structure conservation index	0.97
SVM decision value	0.60
SVM RNA-class probability	0.795136
Prediction	RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16157306 98 - 22407834
AGGUUUCCAUUAUUGGCUUGUUCAAGUACCAAUUAUAAAAGGUUAUUUAUUCUUUUUGUAGGAAGUGUCGAUGUGUCUAUAUACAGCUUGAACCUCUU
......(((....)))...((((((((((...((((((((((.........))))))))))...)).....(((((....)))))))))))))..... ( -18.70)
>DroSec_CAF1 74226 98 - 1
AGGUUGCCAUUAUUGGCUUGUUCAAGUACCAAUUACAAAAGGUUAUUUAUUCUUUUUGUAGAGAGUGUCGAAGUGUCUACAUAAAGCUUGAACCUCUU
.....((((....))))..((((((((.....((((((((((.........))))))))))...((((.((....)).))))...))))))))..... ( -24.80)
>DroSim_CAF1 75959 98 - 1
AGGUUGCCAUUAUUGGCUUGUUCAAGUACCAAUUACAAAAGGUUAUUUAUUCUUUUUGUAGAGAGUGUCGAAGUGUCUACAUAAAGCUUGAACCUCUU
.....((((....))))..((((((((.....((((((((((.........))))))))))...((((.((....)).))))...))))))))..... ( -24.80)
>consensus
AGGUUGCCAUUAUUGGCUUGUUCAAGUACCAAUUACAAAAGGUUAUUUAUUCUUUUUGUAGAGAGUGUCGAAGUGUCUACAUAAAGCUUGAACCUCUU
.....((((....))))..((((((((.....((((((((((.........))))))))))...((((.((....)).))))...))))))))..... (-22.04 = -21.93 +  -0.11)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:04 2006