Locus 5680

Sequence ID 2L_DroMel_CAF1
Location 16,156,996 – 16,157,094
Length 98
Max. P 0.516348
window9001

overview

Window 1

Location 16,156,996 – 16,157,094
Length 98
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 87.10
Mean single sequence MFE -31.72
Consensus MFE -26.04
Energy contribution -26.27
Covariance contribution 0.22
Combinations/Pair 1.08
Mean z-score -1.68
Structure conservation index 0.82
SVM decision value -0.03
SVM RNA-class probability 0.516348
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16156996 98 + 22407834
UCCAU------CCAACCUGCAAUGUCAGCACCAACUGUUGCGUGGGCGUGGCAUGCUGUUGAAUGGCAAUGAUGGUGACGAUAAUAAACUUGUCGCAAGGAAUU
....(------((....(((....((((((.((..(((..((....))..))))).))))))...)))......(((((((........)))))))..)))... ( -30.30)
>DroPse_CAF1 112952 93 + 1
U-----------UAGCCUGCAAUGUCAGCACCAACUGUUGCGUGGGCGUGGCACGGUCCUGAAUGGCAAUGAUGGCGACGAAAAUGAACUUGUCGCACGGAAUG
.-----------...(((((....((((.(((...(((..((....))..))).))).))))...)))......(((((((........)))))))..)).... ( -31.00)
>DroSec_CAF1 73898 104 + 1
UCCAACUCCAAUCAACCUGCAAUGUCAGCACCAACUGUUCCGUGGGCGUGGCAUGCUGUUGAAUGGCAAUGAUGGUGACGAUAAUAAACUUGUCGCAAGGAAUU
(((....(((.(((((..(((.(((((((.(((.(......)))))).)))))))).))))).)))........(((((((........)))))))..)))... ( -33.40)
>DroSim_CAF1 75631 104 + 1
UCCAACUCCAAUCAACCUGCAAUGUCAGCACCAACUGUUCCGUGGGCGUGGCAUGCUGUUGAAUGGCAAUGAUGGUGACGAUAAUAAACUUGUCGCAAGGAAUU
(((....(((.(((((..(((.(((((((.(((.(......)))))).)))))))).))))).)))........(((((((........)))))))..)))... ( -33.40)
>DroYak_CAF1 81909 98 + 1
UCCAU------CCAACCUGCAAUGUCAGCACCAACUGUUGCGUGGGCGUGGCAUGCUGUUGAAUGGCAAUGAUGGUGACGAUAAUAAACUUGUCGCAUGGAAUG
(((((------......(((....((((((.((..(((..((....))..))))).))))))...)))......(((((((........))))))))))))... ( -31.20)
>DroPer_CAF1 101951 93 + 1
U-----------UAGCCUGCAAUGUCAGCACCAACUGUUGCGUGGGCGUGGCACGGUCCUGAAUGGCAAUGAUGGCGACGAAAAUGAACUUGUCGCACGGAAUG
.-----------...(((((....((((.(((...(((..((....))..))).))).))))...)))......(((((((........)))))))..)).... ( -31.00)
>consensus
UCCA________CAACCUGCAAUGUCAGCACCAACUGUUGCGUGGGCGUGGCAUGCUGUUGAAUGGCAAUGAUGGUGACGAUAAUAAACUUGUCGCAAGGAAUG
...............(((((....((((((.((..(((..((....))..))))).))))))...)))......(((((((........)))))))..)).... (-26.04 = -26.27 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:50:02 2006