Locus 5678

Sequence ID 2L_DroMel_CAF1
Location 16,133,193 – 16,133,285
Length 92
Max. P 0.969102
window8998

overview

Window 8

Location 16,133,193 – 16,133,285
Length 92
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 95.43
Mean single sequence MFE -28.24
Consensus MFE -26.46
Energy contribution -26.58
Covariance contribution 0.12
Combinations/Pair 1.10
Mean z-score -1.52
Structure conservation index 0.94
SVM decision value 1.64
SVM RNA-class probability 0.969102
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16133193 92 + 22407834
AUCCAGCGAUGGGGACUUUUAUUGACGAAGCACUUGCAGUCAGGCGCAGUGGAAAUGGAUGCUGUCUGACUUUGUUAGUGAUUCAGUGAAUC
.((((....))))....((((((((.....((((.(((((((((((((...........))).)))))))..))).))))..)))))))).. ( -27.10)
>DroSec_CAF1 62457 92 + 1
AUCCAGCGAUGGGGACUUUUAUUGACGAAGCACUUGCAGUCAGGCGCAGUGGAAAUGGAUGCUGUCUGACUUUGUCAGUGAAUCAGUGAAUC
.((((....)))).(((((((((((((((((....)).((((((((((...........))).)))))))))))))))))))..)))..... ( -29.70)
>DroSim_CAF1 63671 92 + 1
AUCCAGCGAUGGGGACUUUUAUUGACGAAGCACUUGCAGUCAGGCGCAGUGGAAAUGGAUGCUGUCUGACUUUGUCAGUGAAUCAGUGAAUC
.((((....)))).(((((((((((((((((....)).((((((((((...........))).)))))))))))))))))))..)))..... ( -29.70)
>DroEre_CAF1 63329 91 + 1
AUCCAGCGAUGGAGACUUUUAUUAACGAGGCACUGGCAGUCAGGCGCAGGGG-AAUGGAUGAUGUCUGACUUUGUCAGUGAACCAGUGAAUC
.((((....))))...............((((((((((((((((((((....-......)).))))))))..))))))))..))........ ( -27.20)
>DroYak_CAF1 70366 92 + 1
AUCCAGCGAUGGGGACUUUUAUUGACGAAGCACUUGCAGUCAGGCGCAGUGGAAAUGGAUGCUGUCUGACUUUGUUAGUGAAUCAGUGAAUC
.((((....)))).(((((((((((((((((....)).((((((((((...........))).)))))))))))))))))))..)))..... ( -27.50)
>consensus
AUCCAGCGAUGGGGACUUUUAUUGACGAAGCACUUGCAGUCAGGCGCAGUGGAAAUGGAUGCUGUCUGACUUUGUCAGUGAAUCAGUGAAUC
.((((....)))).(((((((((((((((((....)).((((((((((...........))).)))))))))))))))))))..)))..... (-26.46 = -26.58 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:59 2006