Locus 5677

Sequence ID 2L_DroMel_CAF1
Location 16,130,872 – 16,130,992
Length 120
Max. P 0.582030
window8997

overview

Window 7

Location 16,130,872 – 16,130,992
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.78
Mean single sequence MFE -46.52
Consensus MFE -28.40
Energy contribution -28.57
Covariance contribution 0.17
Combinations/Pair 1.32
Mean z-score -1.57
Structure conservation index 0.61
SVM decision value 0.10
SVM RNA-class probability 0.582030
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16130872 120 + 22407834
AACCAUAUGGGCCACAAGGACCGCAACAGUGGUUGACCGAACGGAACCACUGGCCAUUGUAGGGUCCGCAGAGCAGGCAGGGUCCCAGUCCGCCAGUCGGUCCACAGCAAGUGCCGGGCA
..((....))(((....(((((((...(((((((..((....)))))))))(((.((((..((..((((.......)).))..))))))..))).).)))))).(.((....)).)))). ( -44.50)
>DroVir_CAF1 95326 120 + 1
AGCCGUAUGGUCCAAUUGGACCGCAGCAAUGGUUUAUCGCCCGGAACCACUGUCCAUUGUAGGGUCCGCAAAAGCCACAGGGCCCCAGUCCACCUGUUGGUCCACAACAGGUGCCAGGCA
.(((((.((((((....))))))..))..(((......(((((((.((((........)).)).)))((....))....)))).......(((((((((.....))))))))))))))). ( -47.90)
>DroGri_CAF1 63771 120 + 1
AUCCAUAUGGACCUAUCGGACCACAGCAAUGGUUUACUGCUCGGAACCAUUGUCCAUUGUAGGGUCCGCAAAAGCCGCAGGGGCCUAGACCACCUGUUGGACCACAACAGGUACCAGGCA
..((...(((......(((((((((((((((((((........))))))))))....)))..))))))......)))...))((((.(...((((((((.....)))))))).).)))). ( -45.30)
>DroEre_CAF1 61067 120 + 1
AUCCGUAGGGACCACAAGGACCACAGCAGUGGUUGAUCGAACGGAACCACUGGCCAUUGUAGGGUCCGCAGAGCAAACAGGGUCCCAGUCCGCCGGUAGGUCCGCAGCAAGUGCCGGGCA
.......((((((....(((((.(.(((((((((.................))))))))).))))))((...))......)))))).(((((.(((.....)))..((....))))))). ( -43.93)
>DroMoj_CAF1 107152 120 + 1
AUCCAUAUGGCCCUAUUGGACCGCAGCAGUGGUUGACUGCCCUAAACCACUGUCCAUUGUAGGGCCCGCAGAAGCCGCAUGGGCCCAGCCCACCUGUUGGGCCGCAACAGGUGCCAGGCA
........(((((((((((((......(((((((..........))))))))))))..)))))))).((....(((...((((((((((......)))))))).))...))).....)). ( -51.60)
>DroAna_CAF1 57646 120 + 1
AGCCGUAUGGUCCGCAGGGGCCGCAGCAGUGGUUGAUCGAUCGGAACCAUUGGCCGUUGUAGGGUCCGCACAGCAUGCAAGGACCCAGUCCGCCUGUCGGUCCACAGCAAGUACCGGGCA
.(((....((.(((((((((.(...((((((((..((.(........)))..)))))))).(((((((((.....)))..)))))).).)).)))).))).))((.....))....))). ( -45.90)
>consensus
AUCCAUAUGGACCAAAAGGACCGCAGCAGUGGUUGACCGAACGGAACCACUGGCCAUUGUAGGGUCCGCAGAACACGCAGGGGCCCAGUCCACCUGUUGGUCCACAACAAGUGCCAGGCA
........(((((....(((((((((((((((((..........))))))))....))))..)))))((.......))..)))))..((((((.(((.(.....).))).)))...))). (-28.40 = -28.57 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:59 2006