Locus 5676

Sequence ID 2L_DroMel_CAF1
Location 16,127,345 – 16,127,438
Length 93
Max. P 0.761921
window8996

overview

Window 6

Location 16,127,345 – 16,127,438
Length 93
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 83.02
Mean single sequence MFE -28.40
Consensus MFE -20.37
Energy contribution -21.07
Covariance contribution 0.70
Combinations/Pair 1.25
Mean z-score -2.28
Structure conservation index 0.72
SVM decision value 0.50
SVM RNA-class probability 0.761921
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16127345 93 + 22407834
CGGCGACUACAAAUUGUCGGUCUGUGGCCGCCAGUAACUGACUCAUUGUCAGUAAAAAUAAAAGAAAAAUUGUUAACUCUA------CGGCGGCUGUGG
...((((........))))..(((..((((((.(((((((((.....))))))...(((((........))))).....))------)))))))..))) ( -30.90)
>DroSec_CAF1 56599 93 + 1
CGGCGACUACAAAUUGUCGGUCUGUGGCCGCCAGUAACUGACUCAUUGUCAGUAAAAAUAAAAGAAAAAUUGUUAACUCUA------CGGCGGCUGUGG
...((((........))))..(((..((((((.(((((((((.....))))))...(((((........))))).....))------)))))))..))) ( -30.90)
>DroSim_CAF1 57822 93 + 1
CGGCGACUACAAAUUGUCGGUCUGUGGCCGCCAGUAACUGACUCAUUGUCAGUAAAAAUAAAAGAAAAAAUGUUAACUCUA------CGGCGGCUGUGG
...((((........))))..(((..((((((....((((((.....)))))).........(((............))).------.))))))..))) ( -29.80)
>DroEre_CAF1 57284 93 + 1
CGGCGACUACAAAUUGUCGGUCUGUGGCCGCCAGUAACUGACUCAUUGUCAGUAAAAAUAAAUGAAUAAAUGUUAACUCCA------CGUCGGCUGUGG
.((((((........)))(((.....))))))....((((((.....)))))).........................(((------((.....))))) ( -24.70)
>DroYak_CAF1 64519 93 + 1
CGGCGACUACAAAUUGUCGGUCUGUGGCCGUAAGUAACUGACUCAUUGUCAGUAAAAAUAAAAGAAAAAAUUUUAAGUCUA------CGGCGGCUAUGG
...((((........))))..((((((((((..(((((((((.....)))))).....(((((.......)))))....))------).)))))))))) ( -27.40)
>DroAna_CAF1 53720 81 + 1
UGGCCGCUACAAAUUGUCGGUCUGUGGCAGCCCAGCGAUGACUCA------GU------------AAAAUUGUUAACCCGACAACGGCGGCGGCUGGAG
.((((((..(...(((((((....((((((....((.........------))------------....))))))..)))))))..)..)))))).... ( -26.70)
>consensus
CGGCGACUACAAAUUGUCGGUCUGUGGCCGCCAGUAACUGACUCAUUGUCAGUAAAAAUAAAAGAAAAAAUGUUAACUCUA______CGGCGGCUGUGG
...((((........))))..(..((((((((....((((((.....))))))..................(....)...........))))))))..) (-20.37 = -21.07 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:58 2006