Locus 5673

Sequence ID 2L_DroMel_CAF1
Location 16,115,725 – 16,115,828
Length 103
Max. P 0.771908
window8991

overview

Window 1

Location 16,115,725 – 16,115,828
Length 103
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 89.49
Mean single sequence MFE -28.33
Consensus MFE -24.58
Energy contribution -25.63
Covariance contribution 1.06
Combinations/Pair 1.12
Mean z-score -1.72
Structure conservation index 0.87
SVM decision value 0.53
SVM RNA-class probability 0.771908
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16115725 103 + 22407834
UUG-------UGUUUUGGCUCUUGUUUUAUUCAUUUUCCUCCCGCCAGCCGAUUAUGAUUGUCUUUUGUUAUGGCCGCUGUUCAGAGAGCAGCGUAAUUGAUGGCGGGAA
..(-------((....(((....))).....))).....((((((((..(((((((....(((.........))).(((((((...)))))))))))))).)))))))). ( -32.80)
>DroSec_CAF1 44915 103 + 1
UUG-------UGUUUUGGCUCUUGUUUUAUUCAUUUUCCUCCCGCCAGCCGAUUAUGAUUGUCUUUUGUUAUGGCCGCUGUUCAGAGAGCAGCGUAAUUGAUGGCGGGAA
..(-------((....(((....))).....))).....((((((((..(((((((....(((.........))).(((((((...)))))))))))))).)))))))). ( -32.80)
>DroSim_CAF1 46079 103 + 1
UUG-------UGUUUUGGCUCUUGUUUUAUUCAUUUUCCUCCCGCCAGCCGAUUAUGAUUGUCUUUUGUUAUGGCCGCUGUUCAGAGAGCACCGUAAUUGAUGGCGGGAA
..(-------((....(((....))).....))).....((((((((..((((((((..((..(((((..((((...)))).)))))..)).)))))))).)))))))). ( -28.90)
>DroEre_CAF1 46310 103 + 1
UUG-------UGUUUUGGCUCUUGUUUUAUUCAUUUUCCUCCCGCCAGCCGAUUAUGAUUGUCUUUUGUUAUGGCCGCUAUUCAGAGAGCAGCGUAAUUGAUGGCGGGUA
..(-------((....(((....))).....)))......(((((((..((((((((.(((..(((((..((((...)))).)))))..))))))))))).))))))).. ( -30.10)
>DroYak_CAF1 46908 110 + 1
UUGCGUUUUGUGAUUUGGCUCUUGUUUUAUUUAUUUUCUUCCCCCCAGCCGAUUAUGAUUGUCUUUUGUUAUGGCCGUUGUUCACAGAGCGGCGUAAUUGAUGGCGGGAA
...........(((..(((....)))..)))........((((.(((..((((((((((........)))...((((((........))))))))))))).))).)))). ( -24.10)
>DroAna_CAF1 42740 101 + 1
UUG-------UGUUUUAGCUCUUGUUUUGUUCCUAUUC--CCCGCCAGCCGAUUAUGAUAGUCUUUUAUAAUGGCCGUUGUUGAAAGAGCAGCAUAAUUGAUGGCUUUAC
...-------............................--...((((..((((((((....(((((((((((....)))).)))))))....)))))))).))))..... ( -21.30)
>consensus
UUG_______UGUUUUGGCUCUUGUUUUAUUCAUUUUCCUCCCGCCAGCCGAUUAUGAUUGUCUUUUGUUAUGGCCGCUGUUCAGAGAGCAGCGUAAUUGAUGGCGGGAA
.......................................((((((((..(((((((....(((.........))).(((((((...)))))))))))))).)))))))). (-24.58 = -25.63 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:53 2006