Locus 5671

Sequence ID 2L_DroMel_CAF1
Location 16,109,729 – 16,109,824
Length 95
Max. P 0.777645
window8988

overview

Window 8

Location 16,109,729 – 16,109,824
Length 95
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 89.83
Mean single sequence MFE -25.85
Consensus MFE -23.26
Energy contribution -23.43
Covariance contribution 0.17
Combinations/Pair 1.14
Mean z-score -1.46
Structure conservation index 0.90
SVM decision value 0.55
SVM RNA-class probability 0.777645
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16109729 95 - 22407834
CUGUCCAAGCCCAUC-----CCCAAUGGCUUGUCGUAUGUUCCCU-GGACAACGACAAUGGCAGGCAACAAAAGCGCCGGGCAUCAACUCCUCCAAAUGAA
........((((...-----.....((.((((((((.((((....-.))))))))))).).))(((.........)))))))................... ( -27.10)
>DroSec_CAF1 38907 95 - 1
CUGUCCAAGCCCAUC-----CCCAAUGGCUUGUCGUAUGUUCCCC-GGGCAACGACAAUGGCAGGCAACAAAAGCGCCGGGCAUCAACUCCUCCAAAUGAA
........((((...-----.....((.((((((((.((((....-.))))))))))).).))(((.........)))))))................... ( -26.60)
>DroSim_CAF1 40113 95 - 1
CUGUCCAAGCCCAUC-----CCCAAUGGCUUGUCGUAUGUUCCCU-GGGCAACGACAAUGGCAGGCAACAAAAGCGCCGGGCAUCAACUCCUCCAAAUGAA
........((((...-----.....((.((((((((.((((....-.))))))))))).).))(((.........)))))))................... ( -26.60)
>DroEre_CAF1 40414 95 - 1
CUGUCCAAGCCCAUC-----CCCAAUGGCCUGUCGUGUGUUCCCU-GGGCAACGACAAUGGCGGGCAACAAAAGCGCCGGGCAUCAACUCCUCCAAAUGAA
........((((...-----.......(((((((((.((((....-.))))))))))..)))((((.......)).))))))................... ( -27.80)
>DroYak_CAF1 41012 95 - 1
CUGUCCAAGCCCAAC-----CCCGAUAGCCUGUCGUAUGUUCCCU-GGGCAACGACAAUGGCAUGCAACAAAAGCGCCGGGCAUCAACUCCUCCAAAUGAA
........((((...-----.......(((((((((.((((....-.))))))))))..)))..((.......))...))))................... ( -24.90)
>DroAna_CAF1 37351 101 - 1
CAGCCCAAACCCAUGUACACACAGAGAGCCUGUCAUAUGUUUCCCGAGGCAACAACAAUGGCAGGCAACAAAAGCGCCUGGCAUCAACUCCUCCAAAUGAA
..(((.....(..(((....)))..).(((((((((.((((.((...)).))))...))))))))).............)))................... ( -22.10)
>consensus
CUGUCCAAGCCCAUC_____CCCAAUGGCCUGUCGUAUGUUCCCU_GGGCAACGACAAUGGCAGGCAACAAAAGCGCCGGGCAUCAACUCCUCCAAAUGAA
........((((...............(((((((((.(((((....)))))))))))..))).(((.........)))))))................... (-23.26 = -23.43 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:50 2006