Locus 5670

Sequence ID 2L_DroMel_CAF1
Location 16,102,049 – 16,102,140
Length 91
Max. P 0.862991
window8987

overview

Window 7

Location 16,102,049 – 16,102,140
Length 91
Sequences 4
Columns 91
Reading direction forward
Mean pairwise identity 79.30
Mean single sequence MFE -25.90
Consensus MFE -15.93
Energy contribution -16.80
Covariance contribution 0.87
Combinations/Pair 1.10
Mean z-score -2.10
Structure conservation index 0.61
SVM decision value 0.84
SVM RNA-class probability 0.862991
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16102049 91 + 22407834
ACUGAGUAGUGAGAACUGAGAACUGAGUACCAAGUACCCAGUACUGAGGACGUAGCUCAAAGGCGCUGCUAAAUUGUAGCACAUUGUUCAG
.((((((((((.(..((.((.((((.((((...)))).)))).)).))..)...(((....)))(((((......))))).)))))))))) ( -29.70)
>DroSec_CAF1 31220 91 + 1
ACUGAGUAGUGAGAACUGAGCACCAAGUACCGAGUACCGAGUACUGAGGACGUAGCUCAAAGGCGCUGCUAAAUUGUAGCACAUUGUUCAG
.((((((((((.....(((((.((.(((((((.....)).)))))..)).....))))).....(((((......))))).)))))))))) ( -29.60)
>DroSim_CAF1 32450 91 + 1
ACUGAGUAGUGAGAACUGAGCACCAAGUACCGAGUACCGAGUACUGAGGACGUAGCUCAAAGGCGCUGCUAAAUUGUAGCACAUUGUUCAG
.((((((((((.....(((((.((.(((((((.....)).)))))..)).....))))).....(((((......))))).)))))))))) ( -29.60)
>DroAna_CAF1 30224 70 + 1
CCAGAAUACUGAG---------------------UCCUGAGCACUGCGGACGUAGCUCAAAGGCGAUGCAAAAUUGUAACACAUUGUUCCA
...(((((.((.(---------------------((.(((((..(((....))))))))..)))(.((((....)))).).)).))))).. ( -14.70)
>consensus
ACUGAGUAGUGAGAACUGAGCACCAAGUACCGAGUACCGAGUACUGAGGACGUAGCUCAAAGGCGCUGCUAAAUUGUAGCACAUUGUUCAG
.((((((((((.............................((..((((.......))))...))(((((......))))).)))))))))) (-15.93 = -16.80 +   0.87)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:49 2006