Locus 5668

Sequence ID 2L_DroMel_CAF1
Location 16,099,153 – 16,099,243
Length 90
Max. P 0.842452
window8984

overview

Window 4

Location 16,099,153 – 16,099,243
Length 90
Sequences 6
Columns 99
Reading direction forward
Mean pairwise identity 92.11
Mean single sequence MFE -11.13
Consensus MFE -11.16
Energy contribution -11.05
Covariance contribution -0.11
Combinations/Pair 1.14
Mean z-score -0.91
Structure conservation index 1.00
SVM decision value 0.76
SVM RNA-class probability 0.842452
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16099153 90 + 22407834
ACAGAAGCUCACUUAACCCAUUUCAG---------CCAUUUCAGCAAAUGCGUAAACAUUUCACGUAAUCGCUCAACACCUAAUCAGCAUUCGGCUUCA
...(((((.......((.(((((..(---------(.......))))))).))..........((.(((.(((............))))))))))))). ( -11.70)
>DroSec_CAF1 28151 90 + 1
ACAGAAGCUCACUUAACCCAUUUCAG---------CCAUUUCAGCAAAUGCGUAAACAUUUCACGUAAUCGCUCAACACCUAAUCAGCAUUCGGCUUCA
...(((((.......((.(((((..(---------(.......))))))).))..........((.(((.(((............))))))))))))). ( -11.70)
>DroSim_CAF1 29459 90 + 1
ACAGAAGCUCACUUAACCCAUUUCAG---------CCAUUUCAGCAAAUGCGUAAACAUUUCACGUAAUCGCUCAACACCUAAUCAGCAUUCGGCUUCA
...(((((.......((.(((((..(---------(.......))))))).))..........((.(((.(((............))))))))))))). ( -11.70)
>DroEre_CAF1 29701 99 + 1
ACAGAAGCUCACUUAACCCAUUUCAGCCAUUUCAGCCAUUUCAGCAAAUGCGUAAACAUUUCACGUAAUCGCUCAACACCUAAUCAGCAUUCGGCUUCA
...((((((................((.......))......(((...(((((.........)))))...)))...................)))))). ( -12.30)
>DroYak_CAF1 29894 90 + 1
ACAGAAGCUCACUUAACCCAUUUCAG---------CCAUUUCAGCAAAUGCGUAAACAUUUCACGUAAUCGCUCAACACCUAAUCAGCAUUCGGCUUCA
...(((((.......((.(((((..(---------(.......))))))).))..........((.(((.(((............))))))))))))). ( -11.70)
>DroAna_CAF1 27723 81 + 1
UCAGUGGCUCACUUAACCCAUU------------------UCAGCAAAUGCGUAAACAUUUCACGUAAUCGCUCAACACCUAAUCAGCAUUCAGCUUCA
..(((((..........)))))------------------..(((...(((((.........)))))...(((............))).....)))... (  -7.70)
>consensus
ACAGAAGCUCACUUAACCCAUUUCAG_________CCAUUUCAGCAAAUGCGUAAACAUUUCACGUAAUCGCUCAACACCUAAUCAGCAUUCGGCUUCA
...((((((.......................................(((((.........)))))...(((............)))....)))))). (-11.16 = -11.05 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:46 2006