Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,096,375 – 16,096,471 |
Length | 96 |
Max. P | 0.678205 |
Location | 16,096,375 – 16,096,471 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 80.87 |
Mean single sequence MFE | -26.98 |
Consensus MFE | -17.78 |
Energy contribution | -17.83 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.10 |
Mean z-score | -1.65 |
Structure conservation index | 0.66 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.678205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16096375 96 + 22407834 AGAAC--------------------AGAACUUGUGGCAUUUUGUGCUUAUUAUUGGGCAUUCAAAUUGCCUCAAGCAUGAAUUAUGUGCGACCAGCGAAUCAAAUUUGGCGCAAAU ....(--------------------(...((((.((((.((((((((((....))))))..)))).)))).))))..)).......((((.((((..........))))))))... ( -27.70) >DroPse_CAF1 33872 113 + 1 AGAGGAGGUUGGAGUGCGGCUGGAGAAAACUUGUGGCAUU-UGUGCUUAU--UUGGACAUUCAAAUUGCCUCAAGCAUGAAUUAUGUGCGGAGAGCGAAUCAAAUUUGACUCGAAU .((((((((..((((((.((.((......)).)).)))))-)..))))((--((((....))))))..))))..((((.......))))...((((((((...))))).))).... ( -28.00) >DroEre_CAF1 26911 96 + 1 AGAAC--------------------AGAACUUGUGGCAUUUUGUGCUUAUUAUUGGGCAUUCAAAAUGCCUCAAGCAUGAAUUAUGUGCGACCAGCGAAUCAAAUUUGACGCAAAU ....(--------------------(...((((.(((((((((((((((....))))))..))))))))).))))..)).......((((.....(((((...))))).))))... ( -27.20) >DroYak_CAF1 26335 96 + 1 AGAAC--------------------CGAACUUGUGGCAUUUUGUGCUUAUUAUUGGGCAUUCAAAUUGCCUCAAGCAUGAAUUAUGUGCGACCAGCGAAUCAAAUUUGACGCAAAU .....--------------------.....(((.((((.((((((((((....))))))..)))).)))).)))((((.......)))).....(((..(((....)))))).... ( -23.70) >DroAna_CAF1 24945 95 + 1 AGGGC--------------------GAAACUUGUGGCAUU-UGUGCUUAUUAUUGAGCAUUCAAGUUGCCUCAAGCAUGAAUUAUGUGCGGCCAGCGAAUCAAAAUUGGCUCAAGU ..(((--------------------.....(((.((((((-((((((((....))))))..)))).)))).)))((((.......)))).)))(((.(((....))).)))..... ( -27.90) >DroPer_CAF1 35949 113 + 1 AGAGGAGGUUGGAGUGGGGCUGGAGAAAACUUGUGGCAUU-UGUGCUUAU--UUGGACAUUCAAAUUGCCUCAAGCAUGAAUUAUGUGCGGAGAGCGAAUCAAAUUUGACUCGAAU .((((..(((.(((((...(..((..........((((..-..))))..)--)..).))))).)))..))))..((((.......))))...((((((((...))))).))).... ( -27.40) >consensus AGAAC____________________AAAACUUGUGGCAUU_UGUGCUUAUUAUUGGGCAUUCAAAUUGCCUCAAGCAUGAAUUAUGUGCGACCAGCGAAUCAAAUUUGACGCAAAU .((..........................((((.((((....(((((((....)))))))......)))).))))...........(((.....)))..))............... (-17.78 = -17.83 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:45 2006