Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,090,393 – 16,090,488 |
Length | 95 |
Max. P | 0.692765 |
Location | 16,090,393 – 16,090,488 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 79.76 |
Mean single sequence MFE | -22.58 |
Consensus MFE | -13.24 |
Energy contribution | -14.23 |
Covariance contribution | 0.99 |
Combinations/Pair | 1.18 |
Mean z-score | -1.85 |
Structure conservation index | 0.59 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692765 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16090393 95 - 22407834 ---------UUUUUUCGGUGAGCUUGUGCGCUGCUAUAUAU--CUGUGUAUGUGUAUGUGCCGAGUGAAUUUUAUUAGCACUCAUAAGUUGUAAAGUGUAUGGGCA ---------............(((..(((((((((((((((--........))))))).)).(((((...........)))))...........))))))..))). ( -24.90) >DroSec_CAF1 19407 87 - 1 ------------UUUCGGUGAGCUUGUGCGC---UAUAUAU--CUG--UAUCUGUAUGUGCCGAGUGAAUUUUAUUAGCACUCAUAAGUUGUAAAGUGUAUGGGCA ------------.........(((..(((((---(.((((.--(((--(((......)))).(((((...........)))))...)).)))).))))))..))). ( -24.20) >DroSim_CAF1 19418 87 - 1 ------------UUUCGGUGAGCUUGUGCGC---UAUAUAU--CUG--UAUCUGUAUGUGCCGAGUGAAUUUUAUUAGCACUCAUAAGUUGUAAAGUGUAUGGGCA ------------.........(((..(((((---(.((((.--(((--(((......)))).(((((...........)))))...)).)))).))))))..))). ( -24.20) >DroEre_CAF1 20945 101 - 1 UUUUUGUUUUUUUUUUGGUGAGCUUGUGCGC---UAUAUAUAAAUG--AAUCUGUAUGUGCCGAGUGAAUUUUAUUAGCACUCAUAAGUUGUAAAGUGUAUGGGCA .....................(((..(((((---((((((((....--....)))))))...(((((...........)))))...........))))))..))). ( -23.30) >DroYak_CAF1 20425 87 - 1 U------------UUUGGUUAGCUCGUGCAG---UAUAUAU--CUG--UAUCUGUAUGUGCCGAGUGAAUUUUAUUAGCACUCAUAAGUUGUAAAGUGUAUGGGCA .------------........((((((((((---(((((((--...--.....)))))))).(((((...........))))).............))))))))). ( -23.80) >DroAna_CAF1 19129 74 - 1 ---------U---UU---------UGUGCG-----AAUUGU--CGA--CGAGUGAGUGUGCCGAGAGAAUUUUAUUAGUACUCAUAAGUUGUAAAGUGUAUGGC-- ---------.---.(---------..((((-----..(((.--(((--(..((((((((....(((....)))....))))))))..)))))))..))))..).-- ( -15.10) >consensus ____________UUUCGGUGAGCUUGUGCGC___UAUAUAU__CUG__UAUCUGUAUGUGCCGAGUGAAUUUUAUUAGCACUCAUAAGUUGUAAAGUGUAUGGGCA .....................((((((((((...(((((((............)))))))..(((((...........)))))............)))))))))). (-13.24 = -14.23 + 0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:44 2006