Locus 5664

Sequence ID 2L_DroMel_CAF1
Location 16,086,826 – 16,086,946
Length 120
Max. P 0.683056
window8978

overview

Window 8

Location 16,086,826 – 16,086,946
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 84.92
Mean single sequence MFE -28.45
Consensus MFE -20.67
Energy contribution -20.37
Covariance contribution -0.30
Combinations/Pair 1.13
Mean z-score -2.64
Structure conservation index 0.73
SVM decision value 0.31
SVM RNA-class probability 0.683056
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16086826 120 + 22407834
CAGGAGCAUAAUUUAAAUAGCAUGUAAAUUAGACGGAAGUCUAAAAUGAGUGCAUAAUGUCUGCUAAAAGUGUUCUAAGUGAUUGUAAUUUAGGUAAAACUUGCAGCGAAAGCGCGCUUA
...((((............((((.....((((((....)))))).....)))).........((...((((..(((((((.......)))))))....))))...((....)))))))). ( -32.60)
>DroPse_CAF1 19883 120 + 1
CAGCAACAUAAUUUAAAUAGCAUGUAAAUUAGACGAAAGUCUAAAACGAGUGCAUAAUGUCUGCUAAAAGUGUUCUAAGUGAUUGUAAUUUAGGUAAAAGUUUCAGUGAAGGCGCGAGGA
..((...............((((.....((((((....)))))).....)))).....(((((((.(((.(..(((((((.......)))))))....).))).)))..))))))..... ( -27.00)
>DroGri_CAF1 17093 112 + 1
UGGCAACAUAAUUUAAAUAGCAUGUAAAUUAGACGGAAGUCUAAAAUGAGUGCAGAAUGUCUGCUUAAACUGUUCUAAGUGAUUGUAAUUUAGGA-UAAGUUGCGCGUAA-------CUC
..(((((............((((.....((((((....)))))).....)))).................((((((((((.......))))))))-)).)))))......-------... ( -29.50)
>DroYak_CAF1 16881 109 + 1
CAGCAGCAUAAUUUAAAUAGCAUGUAAAUUAGACGGAAGUCUAAAAUGAGUGCAUAAUGUCUGCUAAAAGUGUUCUAAGUGAUUGUAAUUUAGGUAAAACUUG-----------CGCUAA
.((((((((.((.......((((.....((((((....)))))).....)))))).))).)))))...((((((((((((.......)))))))........)-----------)))).. ( -26.51)
>DroMoj_CAF1 26323 112 + 1
UGGCAACAUAAUUUAAAUAGCAUGUAAAUUAGACGGAAGUCUAAAAUGAGUGCAUAAUGUCUGCUAAAACUGUUUUAAGUGAUUGUAAUUUAGGA-UAAGUUGCGAGCAC-------CUC
((....))...........((((.....((((((....)))))).....))))........((((..(((((((((((((.......))))))))-).))))...)))).-------... ( -28.10)
>DroPer_CAF1 22271 120 + 1
CAGCAACAUAAUUUAAAUAGCAUGUAAAUUAGACGGAAGUCUAAAACGAGUGCAUAAUGUCUGCUAAAAGUGUUCUAAGUGAUUGUAAUUUAGGUAAAAGUUUCAGUGAAGGCGCGAGGA
..((...............((((.....((((((....)))))).....)))).....(((((((.(((.(..(((((((.......)))))))....).))).)))..))))))..... ( -27.00)
>consensus
CAGCAACAUAAUUUAAAUAGCAUGUAAAUUAGACGGAAGUCUAAAAUGAGUGCAUAAUGUCUGCUAAAAGUGUUCUAAGUGAUUGUAAUUUAGGUAAAAGUUGCAGGGAA____CG_CUA
.((((((((.((....)).((((.....((((((....)))))).....))))...)))).))))..((((..(((((((.......)))))))....)))).................. (-20.67 = -20.37 +  -0.30)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:41 2006