Locus 5663

Sequence ID 2L_DroMel_CAF1
Location 16,074,047 – 16,074,156
Length 109
Max. P 0.709502
window8977

overview

Window 7

Location 16,074,047 – 16,074,156
Length 109
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 73.92
Mean single sequence MFE -28.61
Consensus MFE -18.10
Energy contribution -18.10
Covariance contribution 0.00
Combinations/Pair 1.14
Mean z-score -1.30
Structure conservation index 0.63
SVM decision value 0.37
SVM RNA-class probability 0.709502
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16074047 109 + 22407834
UUUUCCACAUCUCU-GUUUACUUUUUUCGUCCUUGCAGAAACGCCCCACAAUGCGCCAUUCAUAACGGGCAUACGUCCUCGAUACCGGGUCGGCGACAUAUUGCGAGGUA
..............-...............((((((((....((((....(((.......)))...))))....(((.(((((.....))))).)))...)))))))).. ( -25.50)
>DroVir_CAF1 4870 102 + 1
CUUU----CUCACACUCU----CGCAUUGCAUUUACAGAGACGCCGCACAAUGCACCAUUCAUAACCGGAAUCCGGCCCAGAUAUCGGGUCGGCGACAUAUUGCGGGGCA
....----.......(((----(..............)))).(((((.....))...........(((.((((((((((.......)))))))......))).)))))). ( -27.24)
>DroPse_CAF1 3839 95 + 1
----------CUCU---UUUGCUCUACCG--UUUACAGAGACACCGCACAAUGCGCCAUUCAUAACGGGAAUACGUUCCCGAUACCGGGUCGGCGACAUAUUGCGAGGUA
----------((((---...((......)--)....))))((..((((..(((((((((((.((.((((((....)))))).))..)))).)))).)))..))))..)). ( -30.00)
>DroMoj_CAF1 6384 97 + 1
--------CUCUCA-UUU----UGCAUUGCAUUUACAGAGACGCCGCACAAUGCGCCAUUCAUAACCGGAAUCCGGCCCCGAUAUCGGGUCGGCGACAUAUUGCGUGGCA
--------((((..-...----(((...))).....))))..(((((.(((((((((........((((...)))).((((....))))..))))...))))).))))). ( -35.80)
>DroAna_CAF1 2930 93 + 1
UGCUCCACU-------------CUUCU----CUUCCAGAAACGCCGCACAAUCCGCCAUUCAUAACGGGAAUACGGGCUCGAUAUCGGGUCGGCGACAUAUUGCGAGGUA
.......((-------------(((((----.....)))).....(((.....((((........((......))((((((....))))))))))......))))))... ( -23.10)
>DroPer_CAF1 4948 95 + 1
----------CUCU---UUUGCUCUACCG--UUUACAGAGACACCGCACAAUGCGCCAUUCAUAACGGGAAUACGUUCCCGAUACCGGGUCGGCGACAUAUUGCGAGGUA
----------((((---...((......)--)....))))((..((((..(((((((((((.((.((((((....)))))).))..)))).)))).)))..))))..)). ( -30.00)
>consensus
__________CUCU___U____UCUAUCG__UUUACAGAGACGCCGCACAAUGCGCCAUUCAUAACGGGAAUACGGCCCCGAUACCGGGUCGGCGACAUAUUGCGAGGUA
..........................................(((.(.(((((((((((((.......)))).....((((....))))..))))...))))).).))). (-18.10 = -18.10 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:39 2006