Locus 5662

Sequence ID 2L_DroMel_CAF1
Location 16,067,919 – 16,068,012
Length 93
Max. P 0.964103
window8976

overview

Window 6

Location 16,067,919 – 16,068,012
Length 93
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 75.33
Mean single sequence MFE -24.57
Consensus MFE -13.80
Energy contribution -13.72
Covariance contribution -0.08
Combinations/Pair 1.18
Mean z-score -2.17
Structure conservation index 0.56
SVM decision value 1.56
SVM RNA-class probability 0.964103
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16067919 93 - 22407834
CCCACUCCGCUCUUUUUGGACCCAU--CCAGCACUAUUAGUAUC-UCGACAUUGUGCAGUCAUUAUUCAGUCAGAUUUGACUGCCAUCUGGGGUUA
...(((((.......(((((....)--)))).............-.......((.(((((((....((.....))..)))))))))...))))).. ( -20.70)
>DroPse_CAF1 283282 84 - 1
UCC----------GGCAGAAGGUAU--CGAGCACUAUUUGUGUCCUCGGUACAGUGCAGUCAUUAUUCAGACAGAUUUGACUGCCAUCUGGGGUUA
(((----------..((((..((((--(((((((.....)))..)))))))).(.(((((((....((.....))..)))))))).)))))))... ( -28.60)
>DroEre_CAF1 237790 91 - 1
C--AAUCGCCCCUUUCUGGACCCAU--CCCUCACUAUUAGUAUC-UCGACAUUGUGCAGUCAUUAUUCAGUCAGAUUUGACUGCCAUCUGGGGUUA
.--....(((((.....(((....)--))...............-.......((.(((((((....((.....))..)))))))))...))))).. ( -21.40)
>DroYak_CAF1 229976 91 - 1
C--ACUCGCCCUUUUCUGGACCCAU--CCAGCACUAUUAGUAUC-UCGACAUUGUGCAGUCAUUAUUCAGUCAGAUUUGACUGCCAUCUGGGGUUA
.--....(((((...(((((....)--)))).............-.......((.(((((((....((.....))..)))))))))...))))).. ( -22.70)
>DroAna_CAF1 175480 82 - 1
-------CG------CAAAACCCAUAACGGCCACUAUUAGUGUC-CCCGAGUUGGGUAGUCAUUAUUCAGUCAGAUUUGACUACCAUCUGGGGUUA
-------..------...(((((....(((.(((.....)))..-.)))((...((((((((....((.....))..))))))))..)).))))). ( -25.40)
>DroPer_CAF1 313448 84 - 1
UCC----------GGCAGAAGGUAU--CGAGCACUAUUUGUGUCCUCGGUACAGUGCAGUCAUUAUUCAGACAGAUUUGACUGCCAUCUGGGGUUA
(((----------..((((..((((--(((((((.....)))..)))))))).(.(((((((....((.....))..)))))))).)))))))... ( -28.60)
>consensus
C____________UUCAGAACCCAU__CCAGCACUAUUAGUAUC_UCGACAUUGUGCAGUCAUUAUUCAGUCAGAUUUGACUGCCAUCUGGGGUUA
..................(((((.........((.....))............(.(((((((....((.....))..)))))))).....))))). (-13.80 = -13.72 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:38 2006