| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 16,064,157 – 16,064,250 |
| Length | 93 |
| Max. P | 0.909968 |
| Location | 16,064,157 – 16,064,250 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 78.88 |
| Mean single sequence MFE | -18.08 |
| Consensus MFE | -8.70 |
| Energy contribution | -10.15 |
| Covariance contribution | 1.45 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.48 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.909968 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16064157 93 + 22407834 AUGUCGAGCAAUAAUAUAUUAAAAGGGAAGGAAGGAUCC----------UCCCUUCCUCUCGCACAAAAACCCAAACCCAAUCGAUACACCCUCGGCCACAAA ..((((((.((((...))))....((((.((((((....----------..))))))))))..............................))))))...... ( -19.70) >DroSec_CAF1 239833 89 + 1 AUGUCGAGCAAUAAUAUAUUAAAAGGGGAGGAACCUUCC--------------UUCCUCUCGCACAAAAACCCAAACCCAAUCGAUACACCCUCGGCCACAAA ..((((((................((((((((....)))--------------))))).(((....................)))......))))))...... ( -16.65) >DroSim_CAF1 247022 93 + 1 AUGUCGAGCAAUAAUAUAUUAAAAGGGGAGGAACCUUCC----------UUCCUUCCUCUCGCACAAAAACCCAAACCCAAUCGAUACACCCUCGGCCACAAA ..((((((................(((((((((......----------))))))))).(((....................)))......))))))...... ( -17.65) >DroEre_CAF1 233899 89 + 1 AUGUCGAGCAAUAAUAUAUUAGAAGGGGAGGAACCU--------------UCCUUCCUCCCGCACAAAAACCCAAGCCCAAUCGAUACACCCUCGGCCACAAA ..((((((.................((((((((...--------------...))))))))((............))..............))))))...... ( -21.30) >DroYak_CAF1 226180 99 + 1 AUGUCGAGCAAUACUAUAUUAAAAGGGGAGGACCCUUCCUCUCCC----UUCCUUCCUCUCGCACAAUAACCCAAUCCCAAUCAAUACACCCUUGGCCACAAG .(((((((.((((...))))..((((((((((....))))).)))----)).......)))).))).........................((((....)))) ( -19.90) >DroAna_CAF1 171654 98 + 1 AUGUCGGGUAUUAAUAUAUUAAAUG-AAAAGACCCUUCCACUGGUAUUCUUUUUCCGCCCCGCACUUAGCU----UCCCAAUCAAUUCACCCUCGCCCACAAA .(((.((((...............(-((((((.((.......))...))))))).......((.....)).----...................))))))).. ( -13.30) >consensus AUGUCGAGCAAUAAUAUAUUAAAAGGGGAGGAACCUUCC__________UUCCUUCCUCUCGCACAAAAACCCAAACCCAAUCGAUACACCCUCGGCCACAAA ..((((((...(((....)))....((((((((....................))))))))..............................))))))...... ( -8.70 = -10.15 + 1.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:38 2006