Locus 5660

Sequence ID 2L_DroMel_CAF1
Location 16,056,187 – 16,056,299
Length 112
Max. P 0.993262
window8974

overview

Window 4

Location 16,056,187 – 16,056,299
Length 112
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 93.55
Mean single sequence MFE -28.35
Consensus MFE -26.57
Energy contribution -27.27
Covariance contribution 0.69
Combinations/Pair 1.04
Mean z-score -1.80
Structure conservation index 0.94
SVM decision value 2.39
SVM RNA-class probability 0.993262
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 16056187 112 - 22407834
GCUUGA--CAACGAAAACGAAGCGAAAAUGAAAAAUAAAAUGGCCAAAAGCAUUUGGCCGUUACAGCUGCAGUUUGUCAGUCGUGGCUAAAGCUUCAAUUUGUUUCCUCAUCCC
...(((--.((((((...(((((..................(((((((....)))))))(((((.(((((.....).)))).)))))....)))))..))))))...))).... ( -29.90)
>DroPse_CAF1 267896 112 - 1
GCUUGA--CAACGAAAACGAAGCGAAAAUGAAAAAUAAAAUGGCCAAAAACUUUGGGCCGUUACAGCUGCAGUUUGUCAGUCGUGGCUAAAGCUUCAAUUUGUUUCCCUUUCCU
......--....((((..((((((((..((((.........((((..........))))(((((.(((((.....).)))).)))))......)))).))))))))..)))).. ( -26.20)
>DroSim_CAF1 238823 111 - 1
GCUUGA--CAACGAAAACGAAGCGAAAAUGAAAAAUAAAAUGGCCAA-AACAUUUGGCCGUUACAGCUGCAGUUUGUCAGUCGUGGCUAAAGCUUCAAUUCAUUUCCUCAUCCC
......--....(((...(((((..................((((((-.....))))))(((((.(((((.....).)))).)))))....)))))..)))............. ( -26.90)
>DroYak_CAF1 217943 112 - 1
GCUUGA--CAACGAAAACGAAGCGAAAAUGAAAAAUAAAAUGGCCAAAAACAUUUGGCCGUUACAGCUGCAGUUUGUCAGUCGUGGCUAAAGCUUCAAUUUGUUUCCUCAUCCC
...(((--.((((((...(((((..................(((((((....)))))))(((((.(((((.....).)))).)))))....)))))..))))))...))).... ( -29.90)
>DroAna_CAF1 163853 114 - 1
GCUUCGUCCCACGAAAACGAAGCGAAAAUGAAAAAUAAAAUGGCCAAAAACAUUUGGCCGUUACAGCUGCAGUUUGUCAGUCGUGGCUAAAGCUUCAAUUUGUCCGCCCAUCCC
((((((.....))))...(((((..................(((((((....)))))))(((((.(((((.....).)))).)))))....))))).........))....... ( -31.00)
>DroPer_CAF1 297654 112 - 1
GCUUGA--CAACGAAAACGAAGCGAAAAUGAAAAAUAAAAUGGCCAAAAACUUUGGGCCGUUACAGCUGCAGUUUGUCAGUCGUGGCUAAAGCUUCAAUUUGUUUCCCUUUCCU
......--....((((..((((((((..((((.........((((..........))))(((((.(((((.....).)))).)))))......)))).))))))))..)))).. ( -26.20)
>consensus
GCUUGA__CAACGAAAACGAAGCGAAAAUGAAAAAUAAAAUGGCCAAAAACAUUUGGCCGUUACAGCUGCAGUUUGUCAGUCGUGGCUAAAGCUUCAAUUUGUUUCCCCAUCCC
.........((((((...(((((..................(((((((....)))))))(((((.(((((.....).)))).)))))....)))))..)))))).......... (-26.57 = -27.27 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:37 2006