Locus 566

Sequence ID 2L_DroMel_CAF1
Location 1,760,519 – 1,760,622
Length 103
Max. P 0.524634
window937

overview

Window 7

Location 1,760,519 – 1,760,622
Length 103
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.42
Mean single sequence MFE -31.93
Consensus MFE -18.48
Energy contribution -20.24
Covariance contribution 1.76
Combinations/Pair 1.09
Mean z-score -1.98
Structure conservation index 0.58
SVM decision value -0.02
SVM RNA-class probability 0.524634
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1760519 103 - 22407834
GUGA----CAGCAAAAGUUGCAAAAGCGUCGACAAAAGCGGAAAAUGCAAACCAAC---GAAGAGCAACCAUUUUUGUUGACUUGU--UGGUGGCUUUGGUUUGUUGCGUGU--------
(..(----((((.(((((..(...((((((((((((((.((....(((........---.....))).)).)))))))))))..))--).)..))))).).))))..)....-------- ( -30.82)
>DroSec_CAF1 17553 107 - 1
GUGGCAGGCAGCAAAAGUUGCAAAAUCGUCGACAAAAGCGGAAAAUGCAAACCAGC---GGAGAGCAACCAGUUUUGUUGACUUGU--UGGUGGCUUUGGUUUGUUGCGUGU--------
(..((((((....(((((..(......(((((((((((((.....)))......((---.....))......))))))))))....--..)..))))).))))))..)....-------- ( -34.80)
>DroEre_CAF1 17401 111 - 1
GUGA----CAGCAAAAGUUGCAAAAGCGUCGACAAAAGCGGAAAACGCAAACCAGC---GGAGAGCAACCAUUUUUGUUGACUUGC--UGGCGGCUUUGGUUUGUUGCGUGUUGCAGUCU
(..(----(((((((((((((...((((((((((((((((.....)))......((---.....))......))))))))))..))--).))))))).......)))).)))..)..... ( -37.91)
>DroYak_CAF1 24834 105 - 1
GUGA----CAGCAAAAGUUGCAAAAGCGUCGACAAAAGCGGAAAAUGCAAACCAGC---GGAGAGCAACCAUUUUUGUUGACUUGCUUUGGUGGCUUUGGUUUGUUGCGUGU--------
(..(----((((.(((((..(.((((((((((((((((.((....(((...((...---))...))).)).)))))))))))..))))).)..))))).).))))..)....-------- ( -36.00)
>DroAna_CAF1 17065 104 - 1
GUGA----CAGCAAAAGUUG-AAAAGCGUCGACAAAAGCGAAAAAUAGAAACUGGUAACAGA-AACACAAAUUGUUGUUGACUUGU--UGGUGGCUCUGGUUUAGUGUGCAU--------
....----((((((..(((.-...)))((((((..................(((....))).-((((.....))))))))))))))--))...((.(.........).))..-------- ( -20.10)
>consensus
GUGA____CAGCAAAAGUUGCAAAAGCGUCGACAAAAGCGGAAAAUGCAAACCAGC___GGAGAGCAACCAUUUUUGUUGACUUGU__UGGUGGCUUUGGUUUGUUGCGUGU________
........(((((((((((((....(((((((((((((.((....(((...((......))...))).)).)))))))))))..))....))))))....)))))))............. (-18.48 = -20.24 +   1.76) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:39:53 2006