Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 16,053,167 – 16,053,287 |
Length | 120 |
Max. P | 0.895643 |
Location | 16,053,167 – 16,053,262 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 75.66 |
Mean single sequence MFE | -27.32 |
Consensus MFE | -8.13 |
Energy contribution | -7.66 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.30 |
Mean z-score | -2.77 |
Structure conservation index | 0.30 |
SVM decision value | 0.91 |
SVM RNA-class probability | 0.880896 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16053167 95 - 22407834 AAUUUAUGUGCGAUGGUAAAUAAAAUGAGACCUCCAACGGC--GGCGAAAGCCGCAAAGACGAG-----GCAAUAAAAA--------U-------UUGAAGUGUGUGUAAAGCGCGG-- ..((((((..((....(((((.......(.((((.....((--(((....)))))......)))-----)).......)--------)-------)))...))..))))))......-- ( -25.64) >DroVir_CAF1 249908 112 - 1 AAUUUAUGUGCGCAGGUAAAUAAAAUGUG-CCUCCGCAGACCUGCUGAAAGCCGCA-AGACGAG-----GCAAUAAAAAACGUGUAAGAAAAUUGUGCAAGUGUGUGUUAAACAUUAAA ........(((((((.........(((((-((((.(((....))).....(.(...-.).))))-----))........)))).........)))))))(((((.......)))))... ( -23.77) >DroPse_CAF1 264892 94 - 1 AAUUUAUGUUCU-CGGUAAAUAUACUGAGACCUCCAAUGGC--GGCGAAAGCCGCAAAGACGAG-----GCAAUAAAAA--------U-------CUGAAGAGUGUGUAAAGCAUGG-- ....((((((((-(((((....))))))))((((.....((--(((....)))))......)))-----).........--------.-------................))))).-- ( -30.10) >DroGri_CAF1 219352 109 - 1 AAUUUAUGUGCUGGGGUAAAUAAAAUGGG-CCUCCGCAGACCUGCUGAAAGCCGCA-AGACGAGUGGUGGCAAUAAAAA--------UAAAACUGCCAAAGUAUGUGUAAACCAUUCGA ..(((((.(((....))).))))).((((-(.((.(((....))).))..))).))-...((((((((((((.......--------......))))....((....)).)))))))). ( -24.62) >DroAna_CAF1 161185 95 - 1 AAUUUAUGUGCGCUGGUAAAUAAAAUGAGACCUCCAAUGGC--GGCGAAAGCCGCAAAGACGAG-----GCAAUAAAAU--------U-------UUGAAGUGUGUGUAAAGUAUGG-- ..((((((..((((..((((........(.((((.....((--(((....)))))......)))-----))........--------)-------))).))))..))))))......-- ( -29.69) >DroPer_CAF1 294669 94 - 1 AAUUUAUGUUCU-CGGUAAAUAUACUGAGACCUCCAAUGGC--GGCGAAAGCCGCAAAGACGAG-----GCAAUAAAAA--------U-------CUGAAGAGUGUGUAAAGCAUGG-- ....((((((((-(((((....))))))))((((.....((--(((....)))))......)))-----).........--------.-------................))))).-- ( -30.10) >consensus AAUUUAUGUGCG_CGGUAAAUAAAAUGAGACCUCCAAUGGC__GGCGAAAGCCGCAAAGACGAG_____GCAAUAAAAA________U_______CUGAAGUGUGUGUAAAGCAUGG__ ....((..(((...((.................))........(((....)))...............................................)))..))............ ( -8.13 = -7.66 + -0.47)
Location | 16,053,190 – 16,053,287 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 81.32 |
Mean single sequence MFE | -31.21 |
Consensus MFE | -24.05 |
Energy contribution | -24.38 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.04 |
Mean z-score | -2.20 |
Structure conservation index | 0.77 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895643 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 16053190 97 - 22407834 ---------------GUUCGACUGUGCGUGCGGUUCCUGAAAUUUAUGUGCGAUGGUAAAUAAAAUGAGACCUCCAACGGCGGCGAAAGCCGCAAAGACGAGGCAAUAAAAA ---------------.....(((((.((..((..............))..)))))))...........(.((((.....(((((....)))))......)))))........ ( -26.74) >DroPse_CAF1 264915 110 - 1 AGUGUGUAUGUAGCUAUGUAUGUGUGCGUGCGGUUUUU-AAAUUUAUGUUCU-CGGUAAAUAUACUGAGACCUCCAAUGGCGGCGAAAGCCGCAAAGACGAGGCAAUAAAAA .(..((((..((........))..))))..).......-...(((((..(((-(((((....))))))))((((.....(((((....)))))......))))..))))).. ( -37.20) >DroEre_CAF1 222700 97 - 1 ---------------GUUCGACUGUGCGUGCGGUUCGUGAAAUUUAUGUGCGAUGGUAAAUAAAAUGAGACCUCCAACGGCGGCGAAAGCCGCAAAGACGAGGCAAUAAAAA ---------------...(((((((....)))).))).....(((((.(((....))).)))))....(.((((.....(((((....)))))......)))))........ ( -27.00) >DroYak_CAF1 214870 97 - 1 ---------------GUUCGACUGUGCGUGCGGUUUCUGAAAUUUAUGUGCGAUGGUAAAUAAAAUGAGACCUCCAACGGCGGCGAAAGCCGCAAAGACGAGGCAAUAAAAA ---------------.((((.((...(((..((((((.....(((((.(((....))).)))))..))))))....)))(((((....)))))..)).)))).......... ( -28.50) >DroAna_CAF1 161208 112 - 1 CCUGGAUACGCGGCAGUUGGAGUGUGCGUGCGGUUUUCGGAAUUUAUGUGCGCUGGUAAAUAAAAUGAGACCUCCAAUGGCGGCGAAAGCCGCAAAGACGAGGCAAUAAAAU .(((((..(((((((.........))).))))...)))))..(((((.(((....))).)))))....(.((((.....(((((....)))))......)))))........ ( -33.30) >DroPer_CAF1 294692 110 - 1 AGUGUAUAUGUAGCUAUGUAUGUGUGCGUGCGGUUUUU-AAAUUUAUGUUCU-CGGUAAAUAUACUGAGACCUCCAAUGGCGGCGAAAGCCGCAAAGACGAGGCAAUAAAAA ...(((((((((......)))))))))...........-...(((((..(((-(((((....))))))))((((.....(((((....)))))......))))..))))).. ( -34.50) >consensus _______________GUUCGACUGUGCGUGCGGUUUUUGAAAUUUAUGUGCGAUGGUAAAUAAAAUGAGACCUCCAACGGCGGCGAAAGCCGCAAAGACGAGGCAAUAAAAA ......................(((.(((..((((((....((((((........)))))).....)))))).......(((((....)))))....)))..)))....... (-24.05 = -24.38 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:49:36 2006